PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G016462.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WOX
Protein Properties Length: 396aa    MW: 44082.6 Da    PI: 7.5273
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G016462.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.7e-1857117257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  HL.SW.v1.0.G016462.1  57 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 117
                           89*****************99*************************************995 PP
2Wus_type_Homeobox112.62e-3656118264
     Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                           +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k
  HL.SW.v1.0.G016462.1  56 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
                           689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1253121IPR009057Homeodomain-like
PROSITE profilePS5007110.49553118IPR001356Homeobox domain
SMARTSM003897.5E-955122IPR001356Homeobox domain
CDDcd000865.24E-856118No hitNo description
Gene3DG3DSA:1.10.10.608.6E-756124IPR009057Homeodomain-like
PfamPF000462.0E-1557117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNSH HQWQHEINPS LITGGLCHRA PFTSVVGGCD ERSPEPKPRW  60
NPKPEQIRIL EAIFNSGMVN PPRDEIRRIR AQLQEYGQVG DANVFYWFQN RKSRSKHKLR  120
HLQNSKHHHS NNPQTTTTTA PSSSSSSSSE NKTASPKAPT RGFSSNLVTH RDHHQTSPTA  180
SVNNQTSFQT NNANSHEFLS PTDHHFFFPA PTTTTTTSQG FCFPQNHELS HEIGPCTSVL  240
LSEIMNHNHH HYVDSKKDHE LNNYHKNLMM KMSTNDDDHS HQFSYTSLTP TPRTPSNVVV  300
SSTTTSTTVS APPVPVNQIQ EDQGVVGPPG GGAANNKTMV FINDVAFEVA EGPFNVREAF  360
GEDAVLIHSN GQLVPTDEWG VTPHSLHHGA FYYLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418316.11e-135WUSCHEL-related homeobox 9 isoform X2
TrEMBLA0A2P5DXB21e-155A0A2P5DXB2_PARAD; Homeodomain transcription factor
STRINGEMJ139751e-134(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-62homeobox-3