PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G016510.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ARF
Protein Properties Length: 907aa    MW: 100560 Da    PI: 6.7458
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G016510.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.4e-21138226184
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD++++
  HL.SW.v1.0.G016510.1 138 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSLLL 224
                           99*****************************8544444..48********************************************998 PP

                           EE CS
                    B3  83 kl 84 
                             
  HL.SW.v1.0.G016510.1 225 GI 226
                           74 PP
2Auxin_resp117.79.7e-39254337183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld vrW+nS+Wrs+k
  HL.SW.v1.0.G016510.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWSNSHWRSVK 337
                           79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-44123257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-35131242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-19137224No hitNo description
PROSITE profilePS5086310.828138244IPR003340B3 DNA binding domain
PfamPF023623.7E-19138226IPR003340B3 DNA binding domain
SMARTSM010194.6E-16138238IPR003340B3 DNA binding domain
PfamPF065077.1E-34254337IPR010525Auxin response factor
PfamPF023091.9E-8766862IPR033389AUX/IAA domain
SuperFamilySSF542778.5E-8769848No hitNo description
PROSITE profilePS5174525.356773857IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MGSLWSQKKR KMRLSAVGFS PQPQEGEKRV LNSELWHACA GPLVSLPAVG SRVVYFPQGH  60
SEQVAASTNK EVDAHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKE  120
AYLPAELGAP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA  180
RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SLLLGIRRAN RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDAVRWSN SHWRSVKVGW DESTAGDRQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPP GLPAFHGMKE DDLGMNSQLM WLRGDYGDRG IQALNYQGVG  420
VSPWMQPRFD ASMLGLQPDM YQAMAAAALQ EMRAVDPSKP IPTSLLQFQQ TQNLPNRSAA  480
SLMQSQMMQQ SQPQQVFLQG MQDNQHSAQP QPQTQSHLLQ QQLQHQHSFN SSNQQQQQQL  540
PSQQQQQQQL VDHQQISSAV SPMSHYSSSS QSQSPSMQTI SSMCQQQSFP DSNGTAVTSS  600
IVSPLHSILG SYPPDESSHL LNLPRSNLSS SVWPSKRAAV EPLMSSGPQC VLPQVEQLGQ  660
PQTNISQNSV SLPPFPGREC TIDQEGNNDP HSHLLFGVNI EPSSLLMQNG MSNLRGVGSD  720
SDSTTVPFPS SSYMSTTGTD FSLNPAITPS SCIDESGFLQ SPDNAGQGNQ PSRTFVKVYK  780
SGSFGRSLDL TKFSSYRELR SELARMFGLE GELEDPLRSG WQLVFVDREN DVLLLGDDPW  840
QEFVNSVWCI KILSPQEVQQ MGKRGLELLH SVSMQRLSNN SCDDYPSCQD SRNLSSGITS  900
VGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1532435843388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090447.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLW9QT990.0W9QT99_9ROSA; Auxin response factor
STRINGXP_010090447.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]