PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G016519.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SBP
Protein Properties Length: 139aa    MW: 15485.7 Da    PI: 8.9348
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G016519.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.24.4e-2341105578
                           TT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   5 egCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           ++C++dl  +++yhrrhkvCe hsk++++ v+++          fh lsefDe+k+sCrrrLa+hn+rrrk+q+
  HL.SW.v1.0.G016519.1  41 DNCKEDLFAVNDYHRRHKVCELHSKSTKAHVANQ---------MFHPLSEFDEGKQSCRRRLAGHNRRRRKTQP 105
                           79***************************99986.........5***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114119.24735103IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.22E-2440107IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.9E-134190IPR004333Transcription factor, SBP-box
PfamPF031104.6E-1341102IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MPLFALIWGA ASLVGMTPDP DPIRGFALAL PVAPPPIRGF DNCKEDLFAV NDYHRRHKVC  60
ELHSKSTKAH VANQMFHPLS EFDEGKQSCR RRLAGHNRRR RKTQPDDVGS RLVLPGDGDN  120
EINGHLDIFN LLAAVARAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-16411021484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094493.14e-49squamosa promoter-binding-like protein 14
SwissprotA2YX043e-39SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M83e-39SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLW9R6Y21e-47W9R6Y2_9ROSA; Squamosa promoter-binding-like protein 14
STRINGXP_010094493.12e-48(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.11e-26squamosa promoter binding protein-like 14