PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G016542.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 248aa MW: 28075 Da PI: 10.0134

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G016542.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.8	1.1e-32	14	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknr.atksgyWkatg 87 lp G+rF Ptdeel+ +yL++kv++ +l++ +vi+++d+++++Pw Lp v +++ yfF++++k ++k +r sg+Wk HL.SW.v1.0.G016542.1 14 LPIGYRFCPTDEELLLHYLTRKVHAMPLPA-SVISDFDVFQTDPWALPGDV---KEKRYFFCNHRKMDIlNNKMCKRvNSGSGFWKPVV 98 699*************************.99***********554...4578999999988774566667756779776 PP NAM 88 k.dkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128 + dk ++++ +++++g++ktLvf g r + +kt+W+mhey++ HL.SW.v1.0.G016542.1 99 NkDKLIVASefNNQAIGVRKTLVFCGGkRLFQDSKTRWFMHEYHF 143 515666665899999******774667889*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-38	11	171	IPR003441	NAC domain
PROSITE profile	PS51005	39.095	14	171	IPR003441	NAC domain
Pfam	PF02365	7.7E-21	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEKQNFGTNG GLKLPIGYRF CPTDEELLLH YLTRKVHAMP LPASVISDFD VFQTDPWALP 60 GDVKEKRYFF CNHRKMDILN NKMCKRVNSG SGFWKPVVNK DKLIVASEFN NQAIGVRKTL 120 VFCGGKRLFQ DSKTRWFMHE YHFVRSQTIT NSLHLISQPQ MNWVVCGVFQ KKRKLNNSKQ 180 RKRNELMMTE GSPRPSFSCS SGVTEVSSSI NGGLLEDDQE ESSANIISYN NGSKSSSSSC 240 TSTRKPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-26	12	172	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-26	12	172	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-26	12	172	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-26	12	172	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-26	12	172	18	169	NAC domain-containing protein 19
3swm_B	2e-26	12	172	18	169	NAC domain-containing protein 19
3swm_C	2e-26	12	172	18	169	NAC domain-containing protein 19
3swm_D	2e-26	12	172	18	169	NAC domain-containing protein 19
3swp_A	2e-26	12	172	18	169	NAC domain-containing protein 19
3swp_B	2e-26	12	172	18	169	NAC domain-containing protein 19
3swp_C	2e-26	12	172	18	169	NAC domain-containing protein 19
3swp_D	2e-26	12	172	18	169	NAC domain-containing protein 19
4dul_A	2e-26	12	172	15	166	NAC domain-containing protein 19
4dul_B	2e-26	12	172	15	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010110935.1	2e-83	NAC domain-containing protein 83
TrEMBL	A0A2P5FCC2	1e-101	A0A2P5FCC2_TREOI; NAC domain containing protein
STRING	XP_010110935.1	7e-83	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-40	NAC domain containing protein 83