PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G017082.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

SRS

Protein Properties

Length: 232aa MW: 25102.9 Da PI: 8.9731

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G017082.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	173	1.5e-53	52	208	6	154
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklss 93 +C dCGn+akk+C+++RCRtCC++r+f C+thv+stWvp+a rr+r + + + + ++ ++ +ask++r + +++++++ sst++s+ HL.SW.v1.0.G017082.1 52 RACSDCGNRAKKECKFRRCRTCCRARAFPCSTHVRSTWVPVASRRKRPAVEISGVGDGSSGSSFSASKKPRFNdSQTTAASYSSTSISN 140 57*******************************************999999988888888888888888762333444444555554 PP DUF702 94 aeskkeletss.......lPeevsseavfrcvrvssvddgeee..laYqtavsigGhvfkGiLydqGlee 154 + ++ ++ + lP++v+++a+fr+ rv++++dg+ e +aYq av i GhvfkG+LydqG++e HL.SW.v1.0.G017082.1 141 NALNTFTH--QdailkqsLPSKVHAPAIFRRHRVTAISDGDGEveVAYQVAVRICGHVFKGFLYDQGVDE 208 44333322..23467777****************97665449********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.7E-49	53	207	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.3E-23	54	95	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.6E-22	157	206	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MNQPVYCSSN HPLPLEPSSP NDAVFSYWKW RDQTNADVDD GGGTATTVTS WRACSDCGNR 60 AKKECKFRRC RTCCRARAFP CSTHVRSTWV PVASRRKRPA VEISGVGDGS SGSSFSASKK 120 PRFNDSQTTA ASYSSTSISN NALNTFTHQD AILKQSLPSK VHAPAIFRRH RVTAISDGDG 180 EVEVAYQVAV RICGHVFKGF LYDQGVDEKN GDYSSSSPIV VLSTPNPSSP S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q94CK9	7e-37	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2P5BWY9	2e-73	A0A2P5BWY9_PARAD; Uncharacterized protein
STRING	cassava4.1_013960m	7e-48	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	8e-22	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]