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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | HL.SW.v1.0.G017087.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family | MYB | ||||||||
| Protein Properties | Length: 1237aa MW: 142107 Da PI: 7.9683 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 27.5 | 7.3e-09 | 783 | 828 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r++WT+eEd+ l+ +++ G ++W Ia+ + ++Rt+ qc r+q
HL.SW.v1.0.G017087.1 783 RNPWTAEEDKYLLLFIQEKGINNWIDIAASLRTNRTPFQCLARYQR 828
79******************************************96 PP
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| 2 | Myb_DNA-binding | 32.7 | 1.8e-10 | 837 | 880 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
WT++Ed +l av+ +G +W ++a+ + g t+ qc +rw k
HL.SW.v1.0.G017087.1 837 REWTKDEDAKLRSAVEIFGESDWQSVASVLE-GWTGTQCSNRWKK 880
68*****************************.***********98 PP
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| 3 | Myb_DNA-binding | 44.2 | 4.4e-14 | 890 | 933 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
grWT++Ed++l+ a ++G+++Wk+ a+ ++ gRt+ qc++rw +
HL.SW.v1.0.G017087.1 890 GRWTADEDKRLKVAQLLFGPRNWKKTAQFVP-GRTEVQCRERWVN 933
79*****************************.***********87 PP
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| 4 | Myb_DNA-binding | 50 | 6.6e-16 | 943 | 986 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+WT eEd +l a++++G W+++a+ m+ +Rt+++c+ rw k+l
HL.SW.v1.0.G017087.1 943 KWTVEEDAKLRAAIAEHGYC-WAKVAAAMP-RRTDNMCRRRWKKLL 986
8*****************99.*********.************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50090 | 5.041 | 677 | 777 | IPR017877 | Myb-like domain |
| SMART | SM00717 | 2.3 | 681 | 779 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 4.0E-9 | 684 | 700 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 4.0E-9 | 750 | 783 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 3.0E-16 | 760 | 826 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50090 | 10.023 | 778 | 830 | IPR017877 | Myb-like domain |
| SMART | SM00717 | 5.4E-8 | 782 | 832 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 7.1E-12 | 784 | 830 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 3.65E-6 | 785 | 830 | No hit | No description |
| Pfam | PF13921 | 1.7E-10 | 786 | 844 | No hit | No description |
| SuperFamily | SSF46689 | 2.37E-17 | 813 | 886 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 6.3E-14 | 831 | 885 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 18.126 | 831 | 886 | IPR017930 | Myb domain |
| SMART | SM00717 | 1.1E-12 | 835 | 884 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 5.49E-10 | 838 | 882 | No hit | No description |
| PROSITE profile | PS51294 | 12.819 | 888 | 935 | IPR017930 | Myb domain |
| SMART | SM00717 | 7.4E-12 | 888 | 937 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.9E-12 | 890 | 933 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 9.6E-16 | 890 | 938 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 4.36E-10 | 891 | 935 | No hit | No description |
| SuperFamily | SSF46689 | 1.02E-23 | 916 | 988 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 24.6 | 936 | 990 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 6.1E-18 | 939 | 986 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 1.0E-13 | 940 | 988 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.2E-14 | 943 | 986 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 7.30E-12 | 943 | 986 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1237 aa Download sequence Send to blast |
MAPEEEEEER DKSSSEDDDA FDEDMEALKR ACMITGTDPH DLHNPSSPSA APTAGESISQ 60 DDDDDDDEDD LELVRNIKNR FSTFSDVFEP LSLKPLCVLP PATSDDDEDD DFETLRAIQK 120 RFAAYDYDAL KNSTETSLET QEQVPDPRVS LEKGSCTDLI VHRNDACSPS GSEYACGTTP 180 QSDGHLEMQP AAEITWHHRN NSNPSTSQSN YSSFPKSARV FMDAIKKNRS FQKILRSKLI 240 QIETKIEENK KLKERFKILR DFQVNCKRRT GRALSQLKDS RVQLISRKKS WPCKDSKVHD 300 KRIPVTYYGP AENSHVANYK MALTKFPLSL DRKKWSENEI QNLERGIQQQ FQEKMVQVMV 360 DRLSGGTGEY HDISNDLDNI LASIKNLDIT PENIKAFLPK WDVLVQNVKR DDDDDDDEDD 420 LELVRNIKNR FSTFSDVFEP LSLKPLCVLP PATSDDDEDD DFETLRAIQK RFAAYDYDAL 480 KNSTETFLET QEQVPDPRVS LEKGSCTDLI VHRNDACSPS GSEYACGTTS QSGGHLEMQP 540 SAETTWHHRN NSNPSTSQSN YSSFPKSARV FMDAIKKNRS FQKILRSKLI QIETKIEENK 600 KLKERFKILR DFQVNCKRRT GRALSQLKDS RVQLISRKKS WPCKDSKVHD KRIPVTYYGP 660 AENSHVAKYK MALTKFPLSL DRKKWSENEI QNLEKGIQQQ FQEKMVQVMV DRLSGGTGEY 720 HDISNDLDNI LTSIKNLDIT PENIKAFLPK VNWEQLAFMH VVGRSGAECE ARWLNFEDPL 780 INRNPWTAEE DKYLLLFIQE KGINNWIDIA ASLRTNRTPF QCLARYQRSL NVSILKREWT 840 KDEDAKLRSA VEIFGESDWQ SVASVLEGWT GTQCSNRWKK SLHPTREKIG RWTADEDKRL 900 KVAQLLFGPR NWKKTAQFVP GRTEVQCRER WVNSLDPSLN WDKWTVEEDA KLRAAIAEHG 960 YCWAKVAAAM PRRTDNMCRR RWKKLLPDEV PLLQAARRIQ KAAFIGNFVD RESERPALCP 1020 SDFGPLQLMT TSENINQSNK QAGKLREARK ENLKKSRENS RTDRKKVLGI SNISNCGQAE 1080 TQGSQKSKPE TKKRKQSYKP RSKKTDLTEP ERECLLLEPE KLNLTGDSGW TEPHEAINRQ 1140 GSQETKPETK KRKRPYKPRS KKTDLIEPNE ERECLLLQPE KLNLTGDGDW TEPVGQADRF 1200 GSHEAITRQG SQQSKPETKT RKRPYKPRSK KENRPH* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1h88_C | 1e-26 | 764 | 990 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 1e-26 | 764 | 990 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010097590.1 | 0.0 | uncharacterized protein LOC21400403 isoform X1 | ||||
| TrEMBL | A0A2P5AHC9 | 0.0 | A0A2P5AHC9_TREOI; Octamer-binding transcription factor | ||||
| STRING | XP_010097590.1 | 0.0 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF7441 | 33 | 44 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18100.1 | 0.0 | myb domain protein 4r1 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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