PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G017336.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB_related

Protein Properties

Length: 331aa MW: 36551.1 Da PI: 9.8857

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G017336.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.5	1.5e-13	54	104	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT eE+e l +v+++G+g Wk I r +R+ ++k++w++ HL.SW.v1.0.G017336.1 54 KQKWTSEEEEALRAGVAKHGTGKWKDIQRDPEfnpflVNRSNIDLKDKWRN 104 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.455	49	109	IPR017930	Myb domain
SuperFamily	SSF46689	8.61E-17	51	107	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-7	53	108	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-9	54	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-15	54	105	IPR009057	Homeodomain-like
CDD	cd11660	1.84E-22	55	105	No hit	No description
SMART	SM00526	1.5E-17	165	230	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	24.02	167	235	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	2.8E-14	170	235	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.9E-15	170	240	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.2E-10	171	228	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEAEPRLGLR LRIRVRVVAG RNLLKQEAAL VSPEAGTREK PRRESERRRM GNPKQKWTSE 60 EEEALRAGVA KHGTGKWKDI QRDPEFNPFL VNRSNIDLKD KWRNMSCSAN GQGPREKSRT 120 VKAKANSDAP ATQVSTPQTA VAVPAVRDSA TAPNADDSSK ALPDGKNSSM YNTMIFEALS 180 SLKEPNGSDT SAIVSYIEQR HEVPQNFRRL LSTRLRRLVA QDKLEKVQNC YKVKSHADAS 240 LGTKTPAPKP ESQPRQTQTT VYRTSTDVVD EAAVAAAYKV AEAENKSFVA AEAVKEADRI 300 SEMAEDAESL LQLAKEIFEK CSQGERVYAA *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00652	PBM	Transfer from LOC_Os01g51154	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010090083.2	1e-141	telomere repeat-binding factor 4
Swissprot	F4IEY4	2e-74	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A2P5EFW3	1e-169	A0A2P5EFW3_TREOI; Telomeric repeat-binding factor
STRING	XP_010090083.1	1e-136	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3228	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	7e-60	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]