PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017427.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29707.8 Da    PI: 9.9701
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017427.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.2e-29959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+e+ss
  HL.SW.v1.0.G017427.1  9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDANVALIVFSTKGKLFEFSS 59
                          79***********************************************96 PP
2K-box899e-30831778100
                 K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                               e++++++++ e+ kL +++e Lqr++R+ +GedL++Ls++eLq++eqq++ +lk+iR++Kn+++ e++++lqkk k lq++n+ +
  HL.SW.v1.0.G017427.1  83 PtlSESQDSSRWTLEFPKLMSRVEVLQRNLRNCMGEDLDPLSMRELQNIEQQIDVGLKRIRTRKNQIMNESLSDLQKKAKTLQDRNNLI 171
                           3457788999******************************************************************************9 PP

                 K-box  95 rkklee 100
                           +++l+e
  HL.SW.v1.0.G017427.1 172 TNQLKE 177
                           999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.945161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-33283IPR002100Transcription factor, MADS-box
CDDcd002658.61E-42279No hitNo description
PRINTSPR004044.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014866.1E-2486175IPR002487Transcription factor, K-box
PROSITE profilePS5129713.95991181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRGRVEMKR IENKISRQVT FSKRRSGLLK KAHEISVLCD ANVALIVFST KGKLFEFSSD  60
SSMEEILERY ERYSNAQKQQ AAPTLSESQD SSRWTLEFPK LMSRVEVLQR NLRNCMGEDL  120
DPLSMRELQN IEQQIDVGLK RIRTRKNQIM NESLSDLQKK AKTLQDRNNL ITNQLKENEK  180
RLVDSTNLNQ QANINSPNSS TFLLLAPPPR PRSLPLTIGE AFQERVLTEE NNESQAHEQP  240
TTITTRMPPW MLQHLEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-19174173MEF2 CHIMERA
6byy_B1e-19174173MEF2 CHIMERA
6byy_C1e-19174173MEF2 CHIMERA
6byy_D1e-19174173MEF2 CHIMERA
6bz1_A8e-20188187MEF2 CHIMERA
6bz1_B8e-20188187MEF2 CHIMERA
6bz1_C8e-20188187MEF2 CHIMERA
6bz1_D8e-20188187MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023274.11e-118truncated transcription factor CAULIFLOWER A isoform X2
SwissprotD7SMN63e-91FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A2P5E9881e-130A0A2P5E988_TREOI; MADS-box transcription factor
STRINGXP_010029407.11e-100(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-83AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]