PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017484.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 249aa    MW: 28786.8 Da    PI: 4.6349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017484.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.71.9e-161663148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W +eEde+l+  vk++G ++W++ a+  g++R++k+c++rw++yl
  HL.SW.v1.0.G017484.1 16 KGTWHEEEDERLISFVKLMGEKRWDALAEASGLRRSGKSCRLRWLNYL 63
                          799*******************************************97 PP
2Myb_DNA-binding51.62.1e-1673114548
                           -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           ++eE+ +++++++++G++ W++Iar ++ gRt++++k++w++yl
  HL.SW.v1.0.G017484.1  73 SAEEETIILKLHERWGNK-WSKIARILP-GRTDNDIKNYWRTYL 114
                           89****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6521163IPR017930Myb domain
SuperFamilySSF466896.79E-2714110IPR009057Homeodomain-like
SMARTSM007174.5E-141565IPR001005SANT/Myb domain
PfamPF002492.0E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-201770IPR009057Homeodomain-like
CDDcd001673.45E-91863No hitNo description
PROSITE profilePS5129425.25364118IPR017930Myb domain
SMARTSM007172.3E-1468116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2371118IPR009057Homeodomain-like
CDDcd001671.74E-1073114No hitNo description
PfamPF002491.0E-1473114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDFQIGAMQG EHQLRKGTWH EEEDERLISF VKLMGEKRWD ALAEASGLRR SGKSCRLRWL  60
NYLRPNLKHD QISAEEETII LKLHERWGNK WSKIARILPG RTDNDIKNYW RTYLRKKLAK  120
VEEEIKSEYG LEKGKEHSSS TSTATADHKI WNCDADQYDE DLWGSKSSSW DGCSDGSGLS  180
ADFELTSSPY ENRLSDYWIS LSVLSNEEDS SEMKCYDECN SMVDPYWTVP DDDPCDTWNS  240
SGSLWDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26131181105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027459.11e-71PREDICTED: transcription factor MYB59 isoform X2
RefseqXP_017976688.11e-71PREDICTED: transcription factor MYB59 isoform X1
RefseqXP_022767268.11e-71transcription factor MYB27-like
RefseqXP_022767269.11e-71transcription factor MYB27-like
TrEMBLA0A2P5BJP91e-105A0A2P5BJP9_PARAD; MYB transcription factor
TrEMBLA0A2P5FVF91e-105A0A2P5FVF9_TREOI; MYB transcription factor
STRINGXP_010098805.12e-83(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-50myb domain protein 27