PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017567.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SRS
Protein Properties Length: 219aa    MW: 23605.5 Da    PI: 6.8829
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017567.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70265.61.7e-20665100153
                DUF702 100 letsslPeevsseavfrcvrvss......vddgeeelaYqtavsigGhvfkGiLydqGle 153
                            e++++P+ev+++a f+ vrvss      vd++++++aYqtavsigGh+fkGiLydqGl+
  HL.SW.v1.0.G017567.1   6 EEAQNFPPEVKATATFHVVRVSStvnvngVDQNHDQYAYQTAVSIGGHLFKGILYDQGLQ 65 
                           56789**************9975444444899**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.9E-17765IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016242.4E-191164IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MLGLEEEAQN FPPEVKATAT FHVVRVSSTV NVNGVDQNHD QYAYQTAVSI GGHLFKGILY  60
DQGLQPNTNT TSSSNYTVTG AGDRTTTSAG AGGFDHRNHD HDHHGQQQQQ LPIDYFVSVK  120
SHHHHDHQTG GVIGTVGSSA SASATYLTAN ISSSSLVANA EDHHHHHHHH QNHHHQPLNM  180
FGSSSTTTTT TSTCPILFPS SNAFINNPGM QFFPSRKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5E5G32e-63A0A2P5E5G3_PARAD; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-17Lateral root primordium (LRP) protein-related