PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017693.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 364aa    MW: 41427.9 Da    PI: 9.53
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017693.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-122994170
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70
                          ff ++++s + +++ ++lp kf+++ g++   s   +l  +sg+ W+v+l  +k ++++++++GW+eFvk
  HL.SW.v1.0.G017693.1 29 FFIIMLHSPNVNEHKMMLPAKFTRKLGNE--LSAVAKLVVPSGQCWQVRL--EKADNKIWFKRGWQEFVK 94
                          7889999*****************99855..899****************..*****************8 PP
2B344.33.2e-14256344594
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           l + ++l+++ + +p  +ae+++++  + ++l++   + ++W++++       +     l+ GW++F+ +n+LkegD++vF++++ +++
  HL.SW.v1.0.G017693.1 256 LRKRNSLSKS-VHVPAIYAEKNMNQCSGFIDLMVHGNETQKWRIQCLPrsdLPSC--RELSHGWSKFAVDNNLKEGDVCVFEVVE-KGE 340
                           5455555555.999********9999999*****************443322333..3499*********************876.444 PP

                           ..EE CS
                    B3  91 elvv 94 
                           + v+
  HL.SW.v1.0.G017693.1 341 NIVL 344
                           3444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-142694IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-142694IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-132894No hitNo description
SMARTSM010190.00929107IPR003340B3 DNA binding domain
PfamPF023621.7E-102994IPR003340B3 DNA binding domain
PROSITE profilePS508638.912994IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-18246350IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-17247351IPR015300DNA-binding pseudobarrel domain
CDDcd100172.95E-15250350No hitNo description
PROSITE profilePS5086310.306251352IPR003340B3 DNA binding domain
SMARTSM010193.6E-7252352IPR003340B3 DNA binding domain
PfamPF023627.6E-12253344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNRSRRRTDS PSPSSHRRPH PLPKQPLHFF IIMLHSPNVN EHKMMLPAKF TRKLGNELSA  60
VAKLVVPSGQ CWQVRLEKAD NKIWFKRGWQ EFVKTLTEID YPLNGPSSNT VDPNLDKQPK  120
EKPDDTNDNE INLQIPHSSS KRIAANKLGD KQVFNRDQNP FSSNPKTGRS NKNFRTNSPS  180
IDSPNASGGV KTEEGTPVEQ PGHVNVPRSS GKLKEDENCF PHDLQEQYHE ISKETEKTAN  240
IASKREYENP SFMVILRKRN SLSKSVHVPA IYAEKNMNQC SGFIDLMVHG NETQKWRIQC  300
LPRSDLPSCR ELSHGWSKFA VDNNLKEGDV CVFEVVEKGE NIVLKVWIYC AGWPVEKRLN  360
QMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1423234629137B3 domain-containing transcription factor VRN1
4i1k_B3e-1423234629137B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2179134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-33B3 family protein