PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017768.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 260aa    MW: 28800.9 Da    PI: 4.8186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017768.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-1884134255
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+++AeIrd    + k  r++lg+f++ae Aa a+++a+ +l+g
  HL.SW.v1.0.G017768.1  84 SYRGVRRRP-WGKYAAEIRDsT--R-KGIRVWLGTFDSAEAAALAYDQAAFALRG 134
                           69*******.**********32..2.24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-2183144No hitNo description
SuperFamilySSF541711.37E-2284144IPR016177DNA-binding domain
SMARTSM003807.9E-3884148IPR001471AP2/ERF domain
PfamPF008475.6E-1384134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2984142IPR001471AP2/ERF domain
PROSITE profilePS5103223.28884142IPR001471AP2/ERF domain
PRINTSPR003674.9E-108596IPR001471AP2/ERF domain
PRINTSPR003674.9E-10108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MESSFYFQFS PAAEESSFGN YSLESLSWSD LLSFNDTVVE ELVNPELQYD VVKEEPIEVT  60
SNPNDDVVGV LQNNKGNKEM TKKSYRGVRR RPWGKYAAEI RDSTRKGIRV WLGTFDSAEA  120
AALAYDQAAF ALRGSLAVLN FPVDVVRQSL HQEMKYCRFD DDVAEGPCSA SPVVALKRRH  180
SMRRKRTSTV ANNNKKNKNK EAPAAQSSVV VLEDLGAEYL EQLLNLSSSS ETTSSSSTTT  240
TTTSSPSNDF DFIESLLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-27851421572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176185KRRHSMRRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111912.22e-63ethylene-responsive transcription factor 15
SwissprotA0A3Q7I5Y96e-56ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2P5E8972e-70A0A2P5E897_TREOI; AP2/ERF transcription factor
STRINGXP_010111912.12e-60(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-37ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]