PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G017848.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

SBP

Protein Properties

Length: 277aa MW: 31420.7 Da PI: 9.6634

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G017848.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	120.9	5.8e-38	122	199	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq ++C++dls a++yhrrhkvCe hsk++++ v++++qrfCqqCsrfh l efDe+k sCrrrLa+hn+rrrk+q+ HL.SW.v1.0.G017848.1 122 MCQFDNCKEDLSAANDYHRRHKVCELHSKSTKAHVANQMQRFCQQCSRFHPLFEFDEGKWSCRRRLAGHNRRRRKTQP 199 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-30	117	184	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.769	120	197	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.92E-35	121	201	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-26	123	196	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MILCSSLSKR DLPYPAPNYQ QWFTNSNPID NWNPKVWDWD TVRFLAKPLD FAASPAVNAV 60 DYAKMEEFPA TPFNMKKKTP EITDATLHLN LGGGFTCGDD PGSRPNKRVR SGSPGSTTTY 120 PMCQFDNCKE DLSAANDYHR RHKVCELHSK STKAHVANQM QRFCQQCSRF HPLFEFDEGK 180 WSCRRRLAGH NRRRRKTQPD DVGSRLVLPG DRDNKINGHL DIFNLLAAVA RAQEKSGGKT 240 MSCSLLLDKE QLLQILSKIN SLPLGRIQLP RNIQSFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-29	112	196	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867006.1	1e-107	squamosa promoter-binding-like protein 14
Refseq	XP_015879984.1	1e-107	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	2e-75	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2P5DIW9	1e-104	A0A2P5DIW9_TREOI; SBP-box transcription factor
STRING	XP_010094493.1	1e-103	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	2e-60	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]