PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017874.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Nin-like
Protein Properties Length: 925aa    MW: 103619 Da    PI: 5.825
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017874.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.66.1e-29591642152
                RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           aek+i+l++l++yF++++kdAAk++gvc T+LKriCRq+GIkRWP+Rkik++
  HL.SW.v1.0.G017874.1 591 AEKTITLQVLRQYFAGSLKDAAKSIGVCSTTLKRICRQHGIKRWPSRKIKKV 642
                           589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.734579662IPR003035RWP-RK domain
PfamPF020426.9E-25594642IPR003035RWP-RK domain
SuperFamilySSF542773.19E-24825916No hitNo description
PROSITE profilePS5174524.337831914IPR000270PB1 domain
SMARTSM006663.4E-23831914IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2409.9E-24832910No hitNo description
PfamPF005645.8E-19833912IPR000270PB1 domain
CDDcd064078.65E-40833912No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MEEGVLSPAT MLGAQSEYPM DLDFMDELFL EGCWLETRDV SEYLNQTPSS NPLFDPLFWP  60
TLETTGDLNA NPSQKNNQEE RQKLLFNETL GASIFRALPP SQTINNVANN SGVSEAFITE  120
DDEMRRTSWT GAKETQGPSS CVIEKLCRAL MYIKDVIRDN DILVQIWVPV DREGRRVLTT  180
RDLPFALDDS CPKLAQYRDI SVEFHFPAEE DSKGSIMGLP GRVFSGKVPE WTPDVRYFRK  240
DEYPRLKHAH QFDVRGTLAL PIFEQGSRIC LGVVEIIMTT QKIKYRPELE SICKALEAVN  300
LKSSEVLSTQ NVRVFNKYYQ AALPEIQQVL KSACDTHRLP LAQTWVPCIY QAKEGCRHSD  360
ENYVQCVSTV DHACYVADPH VQGFHEACSE HHLFRGQGVV GGAFMTNQPC FSADITSYPK  420
TEYPLSHHAM MFELHAAVAI RLRSTHTGTA DFVLEFFLPK DCIDPEEQKK MLTSLSLIIQ  480
QCCRTLRVVT DKEIDDERDF QVSEVLVPSN DRPDRVICFQ EVQQNDNDLS LFPVEKPREI  540
SDRRHSKLSQ NQRDSSLKPS DECVEECSTV GEGTFSSLGG GKTGERRRTK AEKTITLQVL  600
RQYFAGSLKD AAKSIGVCST TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ LVIDSVQGAS  660
GAFQIDSFYS NFPELASPNV SGTSPFSTSK ANDHPTPSSL QQPAEGSGGM FSAQATTTAA  720
AATSKSSSTY SQSSSSSQCC SSRSQQHPQT WSNMVTSSED ANGGENSGDD VVLKRVRSEA  780
ELNACHEVVN KQLPRSQSHI SLMEHRKSLK SGFPPSSLKN ERRLPQQEGE LQRVKVTYGE  840
EKTRFRIPSN WGFMDLQQEV GRRFGIQDMA TFTLKYLDDD SEWVLLTCDA DLEECFEVWP  900
ASQNSTIKLS LQLSRGFIGG NDPL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020072.10.0protein NLP4-like
TrEMBLA0A221I0P50.0A0A221I0P5_TREOI; NIN-like transcription factor
STRINGEMJ116960.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.10.0Nin-like family protein