PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018168.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26139.7 Da    PI: 7.6624
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018168.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.4e-271059251
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          +i+n + rqvtfskRr+g+ KKAeELSvLCda+v +iifsstgkl+eyss
  HL.SW.v1.0.G018168.1 10 KIDNATARQVTFSKRRKGLVKKAEELSVLCDADVGLIIFSSTGKLFEYSS 59
                          69**********************************************96 PP
2K-box51.34.9e-18921721999
                 K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                             +++L kei++  + +R+l Ge+L+ L++++LqqLe+ Le +l+++ +kK e ++++i+elq+k k+l een++Lr++++
  HL.SW.v1.0.G018168.1  92 SSYSRLCKEISEKSHRLRQLRGEELHGLNIEDLQQLEKSLEAGLNRVMEKKGEKIMKEINELQMKGKKLMEENERLRQEVA 172
                           5688999999999999**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.969161IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.95E-39277No hitNo description
SuperFamilySSF554556.67E-31375IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.10587177IPR002487Transcription factor, K-box
PfamPF014861.1E-1593171IPR002487Transcription factor, K-box
Gene3DG3DSA:1.20.5.3707.3E-4147176IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FSKRRKGLVK KAEELSVLCD ADVGLIIFSS TGKLFEYSST  60
SMKEIIDRHH LHSKNLEKLE QPSLKLQLVE NSSYSRLCKE ISEKSHRLRQ LRGEELHGLN  120
IEDLQQLEKS LEAGLNRVME KKGEKIMKEI NELQMKGKKL MEENERLRQE VADMSNGRAR  180
QVVGTDSEYV ITEEGHSSES VTNVYTSNGP PQDYDSTSDT SLKLGLPYGG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20169169MEF2C
5f28_B1e-20169169MEF2C
5f28_C1e-20169169MEF2C
5f28_D1e-20169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906595.11e-126MADS-box protein JOINTLESS
RefseqXP_023906601.11e-126MADS-box protein JOINTLESS
RefseqXP_023906610.11e-126MADS-box protein JOINTLESS
RefseqXP_023906617.11e-126MADS-box protein JOINTLESS
SwissprotQ9FUY61e-108JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2P5AQG71e-141A0A2P5AQG7_PARAD; MADS-box transcription factor
STRINGcassava4.1_015543m1e-125(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-102MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]