PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G018271.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

SRS

Protein Properties

Length: 242aa MW: 25347 Da PI: 8.2107

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G018271.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221.8	1.4e-68	22	165	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 ++sCqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa+krrerqqq++++ss + + ++++kr r+ +++ +ss++l+ HL.SW.v1.0.G018271.1 22 GVSCQDCGNQAKKDCVHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQQQQLSSLQHQ--PHQQPKRLRD---NNALMISSSRLQ- 104 579********************************************999988655433..4444444444...455555555554. PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++ +e+ ++P+evss+a+frcv+vss++d+++++aYqtav+igGhvfkGiLyd+G+e+ HL.SW.v1.0.G018271.1 105 TNTSSGMEVGNFPAEVSSQALFRCVKVSSMEDNDDQYAYQTAVNIGGHVFKGILYDHGPES 165 4556799**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	25	No hit	No description
Pfam	PF05142	2.3E-65	22	164	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.3E-28	24	66	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.8E-27	116	163	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MMMRSSSSGG GGAGGGGVVG AGVSCQDCGN QAKKDCVHMR CRTCCKSRGY DCQTHVKSTW 60 VPASKRRERQ QQQQQLSSLQ HQPHQQPKRL RDNNALMISS SRLQTNTSSG MEVGNFPAEV 120 SSQALFRCVK VSSMEDNDDQ YAYQTAVNIG GHVFKGILYD HGPESNYNMG GETSSGGGGG 180 GGGGGNQVQP LDLITVAATA STAAGATEAS PSGAFDPSSL YQQPPLNTYI AGTQFFLPPR 240 S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010113475.1	1e-88	protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	7e-71	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A2P5DE09	1e-107	A0A2P5DE09_PARAD; Protein SHI RELATED SEQUENCE
STRING	XP_010113475.1	4e-88	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-63	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]