PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G018311.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bZIP

Protein Properties

Length: 403aa MW: 43201.3 Da PI: 6.326

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G018311.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.7e-10	205	253	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + HL.SW.v1.0.G018311.1 205 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 253 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-16	201	265	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	203	266	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	205	256	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-10	205	259	No hit	No description
Pfam	PF00170	1.5E-8	205	253	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.47E-23	206	255	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MQDPQSDSSN ANPILPKSSP SSSSTHNNNG ASPFKNTLAP LPAFAATSSS TMQADLSPNP 60 NSGVTGGGGG HRRAHSEVTF RMPEDMMDLS SSDPFNAGGS STASFEEIGS EDDLFYTYID 120 VEKLGGNGTG GNCADQSGGG EVKTEGNNGG GGGEGEKNWS GRPRHRHSSS VDGSSTSTSV 180 FGEIMDAKKA MPPDKLAELW TIDPKRAKRI LANRQSAARS KERKARYIQE LERKVQTLQT 240 EATTLSAQLT LFQRDTTGLS TENTELKLRL QAMEQQAQLR DALNEALKKE VERLKIATGE 300 MMNHSESFNM GMHQMSYNSS NYFPVPQQGG HSGHQNMQLP FNHSQATMSA HHLQQSNSHN 360 ITEFLQNDPV GRLQGLDISN KGSSIVKSEG SSLSASESSA TF*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MQDPQSDSSN ANPILPKSSP SSSSTHNNNG ASPFKNTLAP LPAFAATSSS TMQADLSPNP  60
NSGVTGGGGG HRRAHSEVTF RMPEDMMDLS SSDPFNAGGS STASFEEIGS EDDLFYTYID  120
VEKLGGNGTG GNCADQSGGG EVKTEGNNGG GGGEGEKNWS GRPRHRHSSS VDGSSTSTSV  180
FGEIMDAKKA MPPDKLAELW TIDPKRAKRI LANRQSAARS KERKARYIQE LERKVQTLQT  240
EATTLSAQLT LFQRDTTGLS TENTELKLRL QAMEQQAQLR DALNEALKKE VERLKIATGE  300
MMNHSESFNM GMHQMSYNSS NYFPVPQQGG HSGHQNMQLP FNHSQATMSA HHLQQSNSHN  360
ITEFLQNDPV GRLQGLDISN KGSSIVKSEG SSLSASESSA TF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108472.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-106	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2P5AMK7	0.0	A0A2P5AMK7_PARAD; Basic-leucine zipper transcription factor
STRING	XP_010108472.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-92	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]