PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018510.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 300aa    MW: 35094.1 Da    PI: 8.7505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018510.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-1514103198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                           ffk+l   d ++++ l +p  fa++++g+   s++  + ++  + W+v++  +k+ +r +++kGW+ F  +ngL+ gD +vF+++   s
  HL.SW.v1.0.G018510.1  14 FFKIL--LDDFSNK-LQIPVAFAKNFDGEA--SQQCLIWNPFKKFWNVNV--EKTNNRLFFQKGWNLFLLDNGLEFGDLLVFHYNAGkS 95 
                           88999..9999998.********8888874..4568889***********..********************************96546 PP

                           EE..EEEEE- CS
                    B3  89 efelvvkvfr 98 
                           ef  +v ++ 
  HL.SW.v1.0.G018510.1  96 EF--YVDFYG 103
                           66..887765 PP
2B352.68.3e-17204289187
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           ffk  + +++  +g l +p +f ++h+++ +++   ++ +  g+sW vk++  + ++r  ++ GW +Fvk+n ++ gD++vF+l++ 
  HL.SW.v1.0.G018510.1 204 FFKLVMAESYVMKGFLGVPISFYRTHMKQMQRNGSFIMLQHLGKSWPVKFC-INEPRRARFALGWGKFVKDNTIELGDVCVFELMDV 289
                           777777777777788***********7777788889999***********6.66667788999********************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-1911107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.12611105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-2011107IPR015300DNA-binding pseudobarrel domain
CDDcd100178.56E-1412102No hitNo description
SMARTSM010192.6E-814105IPR003340B3 DNA binding domain
PfamPF023621.3E-1314102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-20200295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-19200295IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-13204298IPR003340B3 DNA binding domain
PfamPF023623.6E-15204289IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239204299IPR003340B3 DNA binding domain
CDDcd100178.68E-16204294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRKPWSRKI YPSFFKILLD DFSNKLQIPV AFAKNFDGEA SQQCLIWNPF KKFWNVNVEK  60
TNNRLFFQKG WNLFLLDNGL EFGDLLVFHY NAGKSEFYVD FYGKNCCQKR GISLGFHREE  120
DQSENNLDAN QTNMVNNGVI DLETEDSEPV EQYRSESSED EFFEEKTQTK RGGAGRPRFR  180
SRSRCDREVR ALEEANKYIP KHPFFKLVMA ESYVMKGFLG VPISFYRTHM KQMQRNGSFI  240
MLQHLGKSWP VKFCINEPRR ARFALGWGKF VKDNTIELGD VCVFELMDVS VMKVFNYIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1417429919142B3 domain-containing transcription factor VRN1
4i1k_B4e-1417429919142B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FXY41e-103A0A2P5FXY4_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-17B3 family protein