PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018519.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 87aa    MW: 10065.7 Da    PI: 9.4695
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018519.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.5e-191461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd+ l++ v+++G g+W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G018519.1 14 KGPWTPEEDQVLINFVQKFGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                          79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-27564IPR009057Homeodomain-like
PROSITE profilePS5129424.347965IPR017930Myb domain
SMARTSM007173.1E-141363IPR001005SANT/Myb domain
PfamPF002492.3E-171461IPR001005SANT/Myb domain
SuperFamilySSF466891.26E-251587IPR009057Homeodomain-like
CDDcd001676.18E-121661No hitNo description
Gene3DG3DSA:1.10.10.605.9E-106587IPR009057Homeodomain-like
PROSITE profilePS512948.2246687IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDQVLINFVQ KFGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TPEEEETIIN LHQMLGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-171287579B-MYB
1gv2_A2e-171287276MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-1712872599MYB TRANSFORMING PROTEIN
1mse_C2e-171287276C-Myb DNA-Binding Domain
1msf_C2e-171287276C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026796.12e-57transcription factor MYB4
SwissprotQ9SJX84e-54MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2P5FLN03e-55A0A2P5FLN0_TREOI; MYB transcription factor
STRINGXP_006479545.12e-55(Citrus sinensis)
STRINGXP_006443843.12e-55(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-56myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]