PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018589.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 348aa    MW: 40314.3 Da    PI: 9.2999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018589.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-1717104497
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           +++ +++lk++ l++p +f++++g+    +  + ++ + g +W++kl  + ++++++l++GW++F++  ++k g +++F++dg+sef  
  HL.SW.v1.0.G018589.1  17 KMIMEHTLKQNKLWIPDRFVRKCGET--LKESVFVKVSCGSKWKMKL--KYYDQKFWLEEGWSDFANYYNIKRGYMLMFRYDGNSEF-- 99 
                           56778999***************855..6667***************..999999****************************9999.. PP

                           EEEEE CS
                    B3  93 vvkvf 97 
                           +v ++
  HL.SW.v1.0.G018589.1 100 YVVIL 104
                           77665 PP
2B358.31.4e-18269346178
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegD 78 
                           ffkvl++++    +rl++p +fa+++     +s +++l+ ++grsW vk+++++++gr    l++GW++F+k+n+L++gD
  HL.SW.v1.0.G018589.1 269 FFKVLMQPSLVYDNRLSFPSTFAKKYIP--STSCDVSLKVLEGRSWCVKYKFENYGGRaaARLRTGWNKFAKDNNLEVGD 346
                           99**********************9953..45669*****************9999998999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-247105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-238106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-1713105No hitNo description
PROSITE profilePS5086313.26714107IPR003340B3 DNA binding domain
SMARTSM010192.3E-1115107IPR003340B3 DNA binding domain
PfamPF023622.9E-1418104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-20263346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-18264346IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.269269347IPR003340B3 DNA binding domain
SMARTSM010191.1E-7269347IPR003340B3 DNA binding domain
CDDcd100171.11E-19269346No hitNo description
PfamPF023623.9E-16269346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEENPKSSSN NNPHFYKMIM EHTLKQNKLW IPDRFVRKCG ETLKESVFVK VSCGSKWKMK  60
LKYYDQKFWL EEGWSDFANY YNIKRGYMLM FRYDGNSEFY VVILDITTVE IDYPSAPALH  120
FDAKKLLTPK KEVMDGDFDD SKKLLTPKKE VMDGNFVENF DEFSPCNQTK MVLALPMPCS  180
QPIPMIMQTS HNDQFQLAIV PQADEYIGQN PIRSQKIPQN SQSSMREQIE NSPRRGKTSW  240
IPEHVKQLKG DEKLAALQMA SGFRSTRPFF KVLMQPSLVY DNRLSFPSTF AKKYIPSTSC  300
DVSLKVLEGR SWCVKYKFEN YGGRAAARLR TGWNKFAKDN NLEVGDH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-36B3 family protein