PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018590.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 115aa    MW: 13082.9 Da    PI: 4.8315
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018590.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.7e-1331894399
                          S-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3 43 grsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           +sW+v ++   +++  + ++++GW  F+++n+Lk+gD++ F l +++ + ++v +fr+
  HL.SW.v1.0.G018590.1 31 YKSWDVDYKLemNNGVPSPTFKAGWAAFAQDNNLKVGDVCAFVLLREMYTAFHVLIFRT 89
                          28999999875566666699************************99988889****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.898190IPR003340B3 DNA binding domain
CDDcd100178.82E-13288No hitNo description
Gene3DG3DSA:2.40.330.101.4E-131188IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-122888IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-93189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MDYLEFDPDD KVVLEVSYGD GMNRRTWDVG YKSWDVDYKL EMNNGVPSPT FKAGWAAFAQ  60
DNNLKVGDVC AFVLLREMYT AFHVLIFRTV PLNFAKEHLK NEGSVILLIP NRGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1608859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-09B3 family protein