PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018719.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 300aa    MW: 33205 Da    PI: 6.9504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018719.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18167217255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr ++ +g+++AeIrdp  ng   r++lg++ t eeAa a+++a+ k++g
  HL.SW.v1.0.G018719.1 167 HYRGVRKRP-WGKFAAEIRDPARNG--SRVWLGTYETSEEAALAYDRAAFKMRG 217
                           7********.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.3E-32166226IPR001471AP2/ERF domain
CDDcd000182.48E-31167226No hitNo description
SuperFamilySSF541714.58E-23167227IPR016177DNA-binding domain
PfamPF008473.2E-14167217IPR001471AP2/ERF domain
PROSITE profilePS5103224.408167225IPR001471AP2/ERF domain
SMARTSM003801.2E-38167231IPR001471AP2/ERF domain
PRINTSPR003672.1E-10168179IPR001471AP2/ERF domain
PRINTSPR003672.1E-10191207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVGEFSIPQL YPNFSSTSTA TTTTDLMFPC LTDQWGDLPL QVNDSEDMIV YNSLRDAVNL  60
GWSPSDHYLT AAAAVVKAEP HDQYYSFDQR PPAPYASEYS LPRIEPWSFQ MNGQDQLFDN  120
SGMITPTVLL SFDNTNLNSD VMSKCFPSND NNNIGSNRRS SVARGRHYRG VRKRPWGKFA  180
AEIRDPARNG SRVWLGTYET SEEAALAYDR AAFKMRGSKA LLNFPHRISS GEPPPVRITA  240
KRRESETSTT TGSGSSPKKT KVVRSLAEDN DVESKKGFST FEVGSTTSFL PLGEKLLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-37163232170ATERF1
3gcc_A3e-37163232170ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109127.15e-85ethylene-responsive transcription factor 2
TrEMBLA0A2P5F3R71e-104A0A2P5F3R7_TREOI; AP2/ERF transcription factor
STRINGXP_010109127.12e-84(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-53ethylene responsive element binding factor 1