PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018728.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 390aa    MW: 43776.6 Da    PI: 6.7982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018728.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.14e-54101351128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+++yL +kv+++ ++  ++++ vd++k+ePwdLp k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkd
  HL.SW.v1.0.G018728.1  10 LPPGFRFHPTDEELITYYLGRKVSDSGFTP-KAVAVVDLNKCEPWDLPDKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKD 97 
                           79*************************998.78***************988999*********************************** PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ke+l+ +g lvg+kktLvfykgrap+gek++Wvmheyrl
  HL.SW.v1.0.G018728.1  98 KEILR-SGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRL 135
                           ****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-642157IPR003441NAC domain
PROSITE profilePS5100559.78310157IPR003441NAC domain
PfamPF023651.3E-2811135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAMAMGIEEL PPGFRFHPTD EELITYYLGR KVSDSGFTPK AVAVVDLNKC EPWDLPDKAS  60
MGEKEWYFFS LKDRKYPTGL RTNRATEAGY WKTTGKDKEI LRSGVLVGMK KTLVFYKGRA  120
PRGEKSNWVM HEYRLQNNHP FNHPNKEEWV VCRVFQKSSG LKKPQQTPSS HEPSIESPCD  180
DTNSIVNNNE FGDFDIMPNL NINNNHSNNL STQLGFMMNS SGSSNNNLMN NNMMMNLNNM  240
NYWTNNNSTT ANGTTSTSTS SPLLPALSSW HNSNLLNPNL SMNSFILKAL QLRNSASNNI  300
DQNYNNPYMP QQGISHHHHH QFGSDILGST ATSNGFHLAS SSSSLLLSKM NNNNNNSNII  360
IDSTSQVQQQ EQPFSLDSIG EDDDHHVLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-5751637174NAC domain-containing protein 19
3swm_B6e-5751637174NAC domain-containing protein 19
3swm_C6e-5751637174NAC domain-containing protein 19
3swm_D6e-5751637174NAC domain-containing protein 19
3swp_A6e-5751637174NAC domain-containing protein 19
3swp_B6e-5751637174NAC domain-containing protein 19
3swp_C6e-5751637174NAC domain-containing protein 19
3swp_D6e-5751637174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094751.11e-148protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A2P5DEH71e-178A0A2P5DEH7_PARAD; NAC domain containing protein
TrEMBLA0A2P5F9N91e-178A0A2P5F9N9_TREOI; NAC domain containing protein
STRINGXP_010094751.11e-147(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-102NAC domain containing protein 58