PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018905.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 231aa    MW: 26242.5 Da    PI: 4.6772
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018905.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B390.81.1e-2846148188
                           EEEE-..-HHHHTT-EE--HHH.HTT...............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                           f+k+ltpsdv+k++rlv+pkk+a ++               +        ++++ + d s rsW+++++yrk+s+++v+t+GW++Fvk+
  HL.SW.v1.0.G018905.1  46 FQKELTPSDVGKLNRLVIPKKYAIKYlpripeesleekeshE---DgmvDGMEMEFHDHSMRSWKFQYSYRKSSQSFVFTRGWSQFVKE 131
                           99**************************99998876655552...0555899************************************* PP

                           HT--TT-EEEEEE-SSS CS
                    B3  72 ngLkegDfvvFkldgrs 88 
                           +gLk++D++ F+l++r+
  HL.SW.v1.0.G018905.1 132 KGLKANDTIAFYLSKRR 148
                           ************98763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-3042149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-2744147IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-2645147No hitNo description
PfamPF023624.6E-2646148IPR003340B3 DNA binding domain
SMARTSM010192.3E-2146153IPR003340B3 DNA binding domain
PROSITE profilePS5086312.33746166IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MIRDGSYQAE FEDFLRNTCL ENLENEASLG VGNVNKGEVL FKQLLFQKEL TPSDVGKLNR  60
LVIPKKYAIK YLPRIPEESL EEKESHEDGM VDGMEMEFHD HSMRSWKFQY SYRKSSQSFV  120
FTRGWSQFVK EKGLKANDTI AFYLSKRRDV SNKKDAEVFS MIEVVEDNSG LLIEGEGAEH  180
SFLGVNFGKD CHKQVEAGEE EDGETVMEEA SNEIPKAANS GFRLFGVQII *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-264514913107DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030541.11e-54AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2P5F3D72e-99A0A2P5F3D7_TREOI; AP2/ERF transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-45RAV family protein