PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G019034.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WOX
Protein Properties Length: 165aa    MW: 16811.3 Da    PI: 7.271
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G019034.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-079264057
                          -HHHHHHHHHHHHHHHHC CS
              Homeobox 40 terqVkvWFqNrRakekk 57
                           +++V++WFqNrR + ++
  HL.SW.v1.0.G019034.1  9 GDANVFYWFQNRRSRSRR 26
                          579************997 PP
2Wus_type_Homeobox45.32.1e-151283865
     Wus_type_Homeobox 38 eLeeyGkiedkNVfyWFQNrkaRerqkq 65
                          +Le++G+++d+NVfyWFQNr++R+r++q
  HL.SW.v1.0.G019034.1  1 MLEKFGAVGDANVFYWFQNRRSRSRRRQ 28
                          599***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.989127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-4632IPR009057Homeodomain-like
SuperFamilySSF466892.02E-6633IPR009057Homeodomain-like
PfamPF000465.5E-5926IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MLEKFGAVGD ANVFYWFQNR RSRSRRRQRQ LQAQLNSIGG GGSGSGSGGG GAIQYESSSS  60
TTVTTTTTAT STTAPATAMA GFGSGGGGGA SAYSFLMGGG GCSSSNSCGV LGDDHHGHHH  120
HHGLFPVSGQ MGFPEIEQSS AVTPGLYPPD SSNMHFQLSD IYLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089195.23e-26WUSCHEL-related homeobox 11, partial
TrEMBLA0A2P5CU044e-33A0A2P5CU04_PARAD; Homeodomain transcription factor
STRINGXP_010089195.12e-25(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152