PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G019035.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WOX
Protein Properties Length: 251aa    MW: 26470.6 Da    PI: 6.9155
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G019035.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.62.7e-1552112257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  HL.SW.v1.0.G019035.1  52 RSRWTPKPEQILVLESIFNSgMVNPPKDETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 112
                           89*****************99*************************************997 PP
2Wus_type_Homeobox1071.1e-3451114265
     Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           +r+RWtP+peQi +Le++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
  HL.SW.v1.0.G019035.1  51 VRSRWTPKPEQILVLESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 114
                           589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.1148113IPR001356Homeobox domain
SuperFamilySSF466891.11E-1349119IPR009057Homeodomain-like
SMARTSM003895.1E-650117IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-851118IPR009057Homeodomain-like
PfamPF000464.8E-1352112IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDQDQGQDHQ HYYSSNSPNG SEIRIHSTST TDNNNNNNNN NNNASSGEPA VRSRWTPKPE  60
QILVLESIFN SGMVNPPKDE TVRIRKLLEK FGAVGDANVF YWFQNRRSRS RRRQRQLQAQ  120
LNSIGGGGSG SGSGGGGAIQ YESSSSTTVT TTTTATSTTA PATAMAGFGS GGGGGASAYS  180
FLMGGGGCSS SNSCGVLGDD HHGHHHHHGL FPVSGQMGFP EIEQSSAVTP GLYPPDSSNM  240
HFQLSDIYLT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089195.25e-59WUSCHEL-related homeobox 11, partial
TrEMBLA0A2P5CU044e-70A0A2P5CU04_PARAD; Homeodomain transcription factor
STRINGXP_010089195.13e-58(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-31WUSCHEL related homeobox 11