PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G019045.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 290aa    MW: 33456.1 Da    PI: 6.1097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G019045.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.6e-151461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+ Ed++l ++++ +G g W+  +++ g+ R++k+c++rw++yl
  HL.SW.v1.0.G019045.1 14 KGAWTALEDQILTEYINTHGEGKWRNLPKEAGLQRCGKSCRLRWLNYL 61
                          79********************************************97 PP
2Myb_DNA-binding53.26.7e-1767111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  HL.SW.v1.0.G019045.1  67 RGNISEEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                           7899******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.914961IPR017930Myb domain
SuperFamilySSF466891.09E-2812108IPR009057Homeodomain-like
SMARTSM007175.2E-121363IPR001005SANT/Myb domain
PfamPF002491.3E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-231568IPR009057Homeodomain-like
CDDcd001675.22E-91661No hitNo description
PROSITE profilePS5129426.21662116IPR017930Myb domain
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002493.5E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2569116IPR009057Homeodomain-like
CDDcd001679.96E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRSPCCPKE GLNKGAWTAL EDQILTEYIN THGEGKWRNL PKEAGLQRCG KSCRLRWLNY  60
LRPDIKRGNI SEEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLAKKVIKAT  120
TTNHDQKRQK VEENDTKHNP PNTHHHHHHV PIRTKATKFT NKVLVYTTHD FQPNRPVVPL  180
LEDHNSNNND MVANSCFDLD FDVGELLRQS VDLSDSELWK LPCNDDDDYY LDINNGVDDH  240
RDGLDHSIKS VDSNNNDDHD QYGYGLKNSR PLLFSEEMLE EWISGNDEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279900.15e-88PREDICTED: transcription factor TT2
TrEMBLA0A2P5DVN61e-120A0A2P5DVN6_PARAD; MYB transcription factor
STRINGVIT_04s0008g01820.t014e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-64myb domain protein 3