PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G019137.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 351aa    MW: 39692.2 Da    PI: 7.0924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G019137.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W++ Ed++l+d++++ G+g W+  +++ g++R++k+c++rw++yl
  HL.SW.v1.0.G019137.1 14 RGAWSALEDKILADYINKNGPGKWRDLPKRAGLKRCGKSCRLRWLNYL 61
                          89********************************************97 PP
2Myb_DNA-binding51.42.5e-1667111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+ +t+Ed+l+v+++++lG++ W++Ia +++ gRt++++k++w++ 
  HL.SW.v1.0.G019137.1  67 RGNISTDEDDLIVRLHRLLGNR-WALIAGRLP-GRTDNEIKNYWNTN 111
                           7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.403961IPR017930Myb domain
SuperFamilySSF466892.33E-2712108IPR009057Homeodomain-like
SMARTSM007172.0E-111363IPR001005SANT/Myb domain
PfamPF002493.6E-141461IPR001005SANT/Myb domain
CDDcd001673.17E-81661No hitNo description
PROSITE profilePS5129423.27562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-2365116IPR009057Homeodomain-like
SMARTSM007176.7E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1467112IPR001005SANT/Myb domain
CDDcd001675.12E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRSPCCEKE GLNRGAWSAL EDKILADYIN KNGPGKWRDL PKRAGLKRCG KSCRLRWLNY  60
LRPGITRGNI STDEDDLIVR LHRLLGNRWA LIAGRLPGRT DNEIKNYWNT NLRKRVNNIN  120
NINININVKG TSLEELMKPS TERSSIPHHH HHQYHHHHHD SMNAHVIRTK AVRCSKVVTP  180
SPSSSWLLLN HHHHHHHEDQ MVMVDQSSVP SWEINSSADD KTKSNYNSTT STATATATAT  240
ASSDINNVIY NKSSEFLMDL DLDEIFMSDI AVLNPNDEYD HRAKNVATSS TGQISRPVDQ  300
NIANYYFDDH LPPLSDLYFD QAVVPDYNIQ GLDDILNEIS CFVNSGECGN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5E7V41e-101A0A2P5E7V4_TREOI; MYB transcription factor
STRINGXP_010666251.14e-76(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.16e-59MYB family protein