PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G019340.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family FAR1
Protein Properties Length: 461aa    MW: 53243.6 Da    PI: 7.923
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G019340.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.31.7e-2542131190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           kfY eYA++vGF vr+ + ++s  +g++  r++ C+k+g++ +++ +   e+++r++ r gC+a++ vk+ek+gkw+vt++ ++HnH+l
  HL.SW.v1.0.G019340.1  42 KFYIEYARRVGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNQRAAFGPEKKPRPSAREGCNATILVKMEKSGKWVVTRFIKDHNHPL 130
                           6********************************************999****************************************9 PP

                  FAR1  90 a 90 
                           +
  HL.SW.v1.0.G019340.1 131 V 131
                           6 PP
2FAR171.91.4e-22301390290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           ++  Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++    +++   + + tr gC  +l+v +++ +kw+vtk+ ++HnH+l
  HL.SW.v1.0.G019340.1 301 CFIVYGRHTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYACrKDRVLPPPPITREGCPVMLRVALRDGDKWVVTKFIKKHNHTL 389
                           5778*************************************998772233334899********************************9 PP

                  FAR1  90 a 90 
                           +
  HL.SW.v1.0.G019340.1 390 M 390
                           7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2342131IPR004330FAR1 DNA binding domain
PfamPF031014.3E-20301390IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
DLEKESGALD SSVEVDVGSS GGGPVLQPYV GMEFDSEDDA KKFYIEYARR VGFVVRVMQR  60
RRSGIDGRTL ARRLGCNKQG FSPNQRAAFG PEKKPRPSAR EGCNATILVK MEKSGKWVVT  120
RFIKDHNHPL VITANGFSTE GDKDKKIEEL TMELEHQEHL CVTYREKLLS FMKNVEEQTE  180
ELSGKIQVIV ENGDKDKKIE ELTVELEHQE HLCATYREKL LSFMKNVEEQ TEELSGKIQV  240
IVENVRKVES KLQKHSQHVE LCTSGVNRSV DQSEESLPMT GNAVEPYVGM EFKSRDDARE  300
CFIVYGRHTG FTVRIHHNRR SRINNMVIGQ DFVCSKEGFR EKKYACRKDR VLPPPPITRE  360
GCPVMLRVAL RDGDKWVVTK FIKKHNHTLM SPSKDEKDRR IRELTLELSN ERQRCKRRCA  420
VYKEQLHMIL KDIEQHTDHL SKRVQDIVQN IKELENEDSE F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411416RQRCKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301085.10.0uncharacterized protein LOC110429388
TrEMBLA0A2P5CY811e-124A0A2P5CY81_TREOI; FHY3/FAR1 family
STRINGXP_010095602.11e-118(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.11e-68FAR1 family protein