PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G019567.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YC
Protein Properties Length: 68aa    MW: 7614.07 Da    PI: 10.2169
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G019567.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC482.8e-156621874
                 NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtl 74
                          ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t+
  HL.SW.v1.0.G019567.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTM 62
                          5789****************************************9998888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-25367IPR009072Histone-fold
SuperFamilySSF471133.67E-15466IPR009072Histone-fold
PfamPF008086.1E-19867IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK  60
TMNSLHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-23267570Transcription Regulator NC2 alpha chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024952614.15e-41uncharacterized protein LOC102616753 isoform X1
RefseqXP_024952618.12e-41dr1-associated corepressor-like isoform X9
SwissprotQ149193e-21NC2A_HUMAN; Dr1-associated corepressor
TrEMBLA0A0B2PUJ13e-41A0A0B2PUJ1_GLYSO; Dr1-associated corepressor
STRINGXP_008346600.11e-39(Malus domestica)
STRINGXP_008364739.16e-40(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-41nuclear factor Y, subunit C11