PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G019779.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

TCP

Protein Properties

Length: 194aa MW: 20999.8 Da PI: 7.6852

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G019779.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.8	8.2e-34	83	154	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +k+ +++++h kv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ HL.SW.v1.0.G019779.1 83 VAKRASTKDRHRKVEGRGRRIRIPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAM 154 5799************************************************************98888444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-28	88	160	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.553	89	143	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MAMIQNHEVQ EEKGRKVAEL KINGGGEAEQ NDVVAEEQTN QTLSLNEAAP TSSSVEPKEE 60 PEERSSADAL QLVPLAVQVT GPVAKRASTK DRHRKVEGRG RRIRIPAACA ARIFQLTREL 120 GHKSDGETIR WLLEHAEPAI IAATGTGTVP AIAMSVNGTL KIPTATPDPE PDDPILKKKR 180 KRPPFQSQPG WLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	182	LKKKRKRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899326.1	8e-67	transcription factor TCP9
Swissprot	O64647	2e-55	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A2P5AXE1	3e-75	A0A2P5AXE1_PARAD; TCP transcription factor
STRING	evm.model.supercontig_18.176	5e-63	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-44	TCP family protein