PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020386.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 401aa    MW: 44001.2 Da    PI: 7.4952
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020386.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.53e-54201471128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+d
  HL.SW.v1.0.G020386.1  20 LPPGFRFHPTDEELVVHYLKKKVASAPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTD 107
                           79****************************.89***************988899*********************************** PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+vl++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  HL.SW.v1.0.G020386.1 108 KPVLTSgGSQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 147
                           ****9977888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6415182IPR003441NAC domain
PROSITE profilePS5100562.33920182IPR003441NAC domain
PfamPF023652.1E-2821147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MESTDSSAGS QQLQNHQPSL PPGFRFHPTD EELVVHYLKK KVASAPLPVS IIAEVDLYKF  60
DPWELPAKAT FGEQEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPV LTSGGSQKVG  120
VKKALVFYGG KPPKGIKTNW IMHEYRLAEN KAINKPPPGC DLGNKKNSLR LDDWVLCRIY  180
KKNNTNRAVM DHERDQEAME EMLGPMNSHN NYNHNYNHSH NNNNNIPVPH PMGPHNGKLQ  240
LLLPKAATLL SYGALSENDH NLFDGMLSND QANISNTTNT TNTASLLLPP SSTMSIKRSL  300
IQGLYWPNEI VDDEEAAADA GAGPSSSSSS KRLHLDDSCT AATTTTTMGE GNHSNSIASL  360
LSQLPNQTSS LHQQTMLGAL GGSDGLFRGP YQLPGMNWYS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-751718514168NO APICAL MERISTEM PROTEIN
1ut4_B9e-751718514168NO APICAL MERISTEM PROTEIN
1ut7_A9e-751718514168NO APICAL MERISTEM PROTEIN
1ut7_B9e-751718514168NO APICAL MERISTEM PROTEIN
3swm_A1e-741718517171NAC domain-containing protein 19
3swm_B1e-741718517171NAC domain-containing protein 19
3swm_C1e-741718517171NAC domain-containing protein 19
3swm_D1e-741718517171NAC domain-containing protein 19
3swp_A1e-741718517171NAC domain-containing protein 19
3swp_B1e-741718517171NAC domain-containing protein 19
3swp_C1e-741718517171NAC domain-containing protein 19
3swp_D1e-741718517171NAC domain-containing protein 19
4dul_A9e-751718514168NAC domain-containing protein 19
4dul_B9e-751718514168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089502.11e-176NAC transcription factor 56
SwissprotQ9LD441e-116NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2P5BCG00.0A0A2P5BCG0_PARAD; NAC domain containing protein
STRINGXP_010089502.11e-176(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-108NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]