PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G020471.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 25289.6 Da PI: 5.0971

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G020471.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1.1e-17	25	76	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++q+++Le+ F+ ++++ +e++ +LA++lg++ rqV vW+qN+Ra+++ HL.SW.v1.0.G020471.1 25 KRLNEHQVRVLERNFNYEKKLEQEHKHQLADQLGIPARQVAVWYQNKRARWR 76 5689***********************************************9 PP
2	HD-ZIP_I/II	102.8	3e-33	23	113	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +k+rl+++qv++LE++F+ e+kLe+e+K++la +Lg+ +rqvavW+qn+RAR++t+ lE+d+++L++++d+ +e++rLe ev Lr e HL.SW.v1.0.G020471.1 23 NKKRLNEHQVRVLERNFNYEKKLEQEHKHQLADQLGIPARQVAVWYQNKRARWRTQSLEVDCTTLQHRLDTALAEKRRLEGEVLVLRGE 111 69***********************************************************************************9988 PP HD-ZIP_I/II 91 lk 92 l+ HL.SW.v1.0.G020471.1 112 LD 113 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.43E-15	13	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.483	18	78	IPR001356	Homeobox domain
SMART	SM00389	5.7E-11	20	82	IPR001356	Homeobox domain
CDD	cd00086	3.04E-11	24	79	No hit	No description
Pfam	PF00046	4.8E-15	25	76	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.4E-17	25	81	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	53	76	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDQIQNQKGS SSSSTKVVAQ NMNKKRLNEH QVRVLERNFN YEKKLEQEHK HQLADQLGIP 60 ARQVAVWYQN KRARWRTQSL EVDCTTLQHR LDTALAEKRR LEGEVLVLRG ELDMACQALQ 120 LTDNNITIYY DNTTYYDNIN NNIDSSYCTA TTTTSTTATT DQEQGQEGDG RSYSSFSDNP 180 QYDHHHVINN YDHLLDHIDD DQFLQIDHDF FSSLIDW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	9e-24	homeobox protein 52