PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020666.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 397aa    MW: 44377.9 Da    PI: 4.6008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020666.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19120169255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  HL.SW.v1.0.G020666.1 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 169
                           69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-32120179IPR001471AP2/ERF domain
SMARTSM003801.7E-37120183IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22120179IPR016177DNA-binding domain
PROSITE profilePS5103223.999120177IPR001471AP2/ERF domain
CDDcd000181.25E-33120178No hitNo description
PfamPF008474.4E-12121169IPR001471AP2/ERF domain
PRINTSPR003671.2E-11121132IPR001471AP2/ERF domain
PRINTSPR003671.2E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MCGGAIISDF ISTTGPPRSK RLTSNYLWPD LKKSSSGKRF SKKTHMRSEI VDLDDDFEAD  60
FQGFKDESDV EDFDDDAVDV KPFAFTARNT PTLSRGSTTV KYTESDGLAE KSAKRKRKNQ  120
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGS KAKVNFPDET  180
PRASPKCSVK DNLRKSLPKA HVVQSFESNM NTNFDLGNNS DQDYYSAMGF LEEKPLTNQY  240
DYVESLPANP EAALKLSPAT TTTPVYFSSD QGSNSFECSD FCWGERGSKT PEISSVFSGT  300
LESDDSLFLE DASPMKKLKT DSENVVPQAE ENNSKTLSEE LSSFESQMKY FQMPYLDGNW  360
DATSFESLLA GDTTQDGGNA MDLWSFDDFT MSGEVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22120177260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089706.10.0ethylene-responsive transcription factor RAP2-12
RefseqXP_024016963.10.0ethylene-responsive transcription factor RAP2-12
RefseqXP_024016964.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLA0A2P5B8I20.0A0A2P5B8I2_PARAD; AP2/ERF transcription factor
TrEMBLA0A2P5CNA80.0A0A2P5CNA8_TREOI; AP2/ERF transcription factor
STRINGXP_010089706.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.38e-73related to AP2 12