PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020752.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 260aa    MW: 29148.6 Da    PI: 9.2654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020752.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19132181255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae Aaka+++a+ +++g
  HL.SW.v1.0.G020752.1 132 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFETAELAAKAYDRAAIEFRG 181
                           59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-33131191No hitNo description
Gene3DG3DSA:3.30.730.103.8E-32132190IPR001471AP2/ERF domain
PROSITE profilePS5103225.014132189IPR001471AP2/ERF domain
PfamPF008471.1E-13132181IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-22132191IPR016177DNA-binding domain
SMARTSM003806.3E-37132195IPR001471AP2/ERF domain
PRINTSPR003672.0E-11133144IPR001471AP2/ERF domain
PRINTSPR003672.0E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSFPTFLRNV TVDEEHSIMV STLKYVICGE TDPGPTRPQG QVAQPLKSLQ IATSATNSTN  60
ESTLLMSFPD SDTCRVCKIN GCLGCNYFRP SNERAKTTKT TSSSSWSLSF ARTKASNDKN  120
NSGVVARKKK KNYRGVRQRP WGKWAAEIRD PRRAARVWLG TFETAELAAK AYDRAAIEFR  180
GSKAKLNFPM SEFENKNDNK CHNGLVTDTT VSNSQVGQQK NTSWENDSEF WDEVEGDWVR  240
MMNFQTLEQE TVLQVKTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-25131190161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-25129190264ATERF1
3gcc_A3e-25129190264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098462.16e-64ethylene-responsive transcription factor ERF109
TrEMBLA0A2P5ATD71e-82A0A2P5ATD7_PARAD; AP2/ERF transcription factor
STRINGXP_010098462.12e-63(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-36redox responsive transcription factor 1