PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021020.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SBP
Protein Properties Length: 427aa    MW: 48018.8 Da    PI: 7.8056
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021020.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.13.3e-40108184278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           C v+gC+adls+++eyh+rh+vCe hsk+p v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  HL.SW.v1.0.G021020.1 108 CLVDGCRADLSNCREYHKRHRVCERHSKTPIVVVKGEEKRFCQQCSRFHSLGEFDEIKRSCRKRLDGHNRRRRKSQP 184
                           **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.1E-32101169IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.308105182IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-37107187IPR004333Transcription factor, SBP-box
PfamPF031101.5E-29108181IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDWDFREFGW EESTELDPKE DDDDDLVFDF ISSGRTTTQK SSSSSTTTTT TTAPSSEGLK  60
LGSTTTMTDP TEQQSLKRPN QVLGDSNLAS SPSGSSKRLN GGAQKLSCLV DGCRADLSNC  120
REYHKRHRVC ERHSKTPIVV VKGEEKRFCQ QCSRFHSLGE FDEIKRSCRK RLDGHNRRRR  180
KSQPEPLYFS SKGFLSGYKG WDYFSLLMFE TLVKLFLKSP RILHFGSPQI YAATSVKSLW  240
PMDTKTGGQE SWIYSPPLPH KRIQVNQQSP SPTSFNGGDK RVFFLQKNDP KQGNQTYPET  300
ILCHPSEPPG KGREKSHILS SEEISLPIDS GGRALYLLST NPTQLSGVNQ MGQHNESFPY  360
PFQLLDHNDG KDKPLDHHHH HCHHHLPAYD VNKSNIYGNM MLRMGPEDCL ENGAAAALQM  420
LPISLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-241081811184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112387.21e-136squamosa promoter-binding-like protein 9
TrEMBLA0A2P5FC860.0A0A2P5FC86_TREOI; SBP-box transcription factor
STRINGXP_010112387.11e-135(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-41SBP family protein