PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G021095.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

LBD

Protein Properties

Length: 209aa MW: 22858.1 Da PI: 7.7032

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G021095.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.7	4.3e-29	2	100	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C ++Cvl+ ++ p++q +++ +++k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++ HL.SW.v1.0.G021095.1 2 SCNGCRVLRKGCGESCVLRSCLhwiesPEAQGNATLFLAKFFGRSDLMSFISAVPDHHRPALFQSLLFEACGRTVNPVNGAVGLLSSGN 90 6************************************************************************************** PP DUF260 85 qqleqlkael 94 ++++q+++e+ HL.SW.v1.0.G021095.1 91 WHVCQAAVET 100 ****9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.607	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSCNGCRVLR KGCGESCVLR SCLHWIESPE AQGNATLFLA KFFGRSDLMS FISAVPDHHR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQAAVET ILCGGVLRPM QGGLLMQKLD 120 ESSDMLAVAG DTSSWPSSAY RYFPSLPSIY DPRQEQYYSG ARGSSSIFPM TEKLVWRDSI 180 SRSSEESVMT KSFGIGDRKE QKLLNLFV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092590.1	6e-88	LOB domain-containing protein 39
Swissprot	Q9SN23	5e-62	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2P5EZY5	1e-113	A0A2P5EZY5_TREOI; Lateral organ boundaries domain containing protein
STRING	XP_010092590.1	2e-87	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-64	LOB domain-containing protein 38