PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021105.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 140aa    MW: 15781.1 Da    PI: 10.1699
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021105.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.22.4e-3478452128
                   NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl
  HL.SW.v1.0.G021105.1   7 KMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsNGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 84 
                           55889*************************************9978899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.727199IPR003441NAC domain
SuperFamilySSF1019412.09E-36591IPR003441NAC domain
PfamPF023653.4E-161284IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MHADVAKMGE KEWYFFSLRD RKYPTGLRTN RATGAGYWKA TGKDREVYSA SNGALLGMKK  60
TLVFYKGRAP RGEKTKWVMH EYRLDGEFSS RHTCKVTCIH THVYGPPPSF VPPHTCDVNF  120
KLSIGDGGGA CRWTRLFSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2968466142NO APICAL MERISTEM PROTEIN
1ut4_B2e-2968466142NO APICAL MERISTEM PROTEIN
1ut7_A2e-2968466142NO APICAL MERISTEM PROTEIN
1ut7_B2e-2968466142NO APICAL MERISTEM PROTEIN
3swm_A2e-2968469145NAC domain-containing protein 19
3swm_B2e-2968469145NAC domain-containing protein 19
3swm_C2e-2968469145NAC domain-containing protein 19
3swm_D2e-2968469145NAC domain-containing protein 19
3swp_A2e-2968469145NAC domain-containing protein 19
3swp_B2e-2968469145NAC domain-containing protein 19
3swp_C2e-2968469145NAC domain-containing protein 19
3swp_D2e-2968469145NAC domain-containing protein 19
4dul_A2e-2968466142NAC domain-containing protein 19
4dul_B2e-2968466142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020105.14e-60protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8512e-48NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2P5EY973e-60A0A2P5EY97_TREOI; NAC domain containing protein
STRINGXP_010094524.13e-59(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-50NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]