PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021106.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 383aa    MW: 42762.4 Da    PI: 8.0232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021106.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.22e-3378452128
                   NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl
  HL.SW.v1.0.G021106.1   7 KMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsNGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 84 
                           45789*************************************9978899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.571106IPR003441NAC domain
SuperFamilySSF1019411.16E-395106IPR003441NAC domain
PfamPF023653.0E-151284IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MHADVAKMGE KEWYFFSLRD RKYPTGLRTN RATGAGYWKA TGKDREVYSA SNGALLGMKK  60
TLVFYKGRAP RGEKTKWVMH EYRLDGEFSS RHTCKEEWVI CRIYHKTGEK KNPIFQGRQG  120
CLPALLEAQT QTQSTPTPTP TPMNALLLEE FEYQTQNPMQ NIPNQSQNQN QNRNRNPFLN  180
SSSSSNDDLK SLITNNPVVS QSHLFPIHGI STSSSSSCCA TATTVATTNK NPSTSSSSSM  240
LFMSLLSHQD CTWNNKQQCQ EQQLTVPKQC KTETNFSHFQ APPQPLPSSS SGPPDNDNYN  300
DYFHPNNYNH NNNNNALLFE SDDYGVLGFP SPSNAAPPTH LHDMSTSAVA NFNRAGFQFQ  360
TLLSDPLTKL AGGESWTPFD AY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-33610666165NO APICAL MERISTEM PROTEIN
1ut4_B7e-33610666165NO APICAL MERISTEM PROTEIN
1ut7_A7e-33610666165NO APICAL MERISTEM PROTEIN
1ut7_B7e-33610666165NO APICAL MERISTEM PROTEIN
3swm_A8e-33610669168NAC domain-containing protein 19
3swm_B8e-33610669168NAC domain-containing protein 19
3swm_C8e-33610669168NAC domain-containing protein 19
3swm_D8e-33610669168NAC domain-containing protein 19
3swp_A8e-33610669168NAC domain-containing protein 19
3swp_B8e-33610669168NAC domain-containing protein 19
3swp_C8e-33610669168NAC domain-containing protein 19
3swp_D8e-33610669168NAC domain-containing protein 19
4dul_A7e-33610666165NAC domain-containing protein 19
4dul_B7e-33610666165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021284753.11e-113LOW QUALITY PROTEIN: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8511e-64NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2P5A9741e-157A0A2P5A974_PARAD; NAC domain containing protein
STRINGEOY159121e-108(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-60NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]