PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021191.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 455aa    MW: 48862.5 Da    PI: 8.8263
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021191.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-081334426
                          ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                            Cr+f+r G C yG rCkF H+
  HL.SW.v1.0.G021191.1 13 DVCRNFQR-GSCMYGQRCKFLHV 34
                          57******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.563936IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-51035IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-51236IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-61334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-71333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSKLAPYSPP PKDVCRNFQR GSCMYGQRCK FLHVTSSQQQ QQQKPNNTFS YQQQQQQKPS  60
NPYGFGVQNN PPPKGAADFG SKPSQYKPFQ NSWTRSSSTP TANTTPENQS QTTNHKCTDR  120
ESCRRIAVED FQNERPLWRL TCYGHWKNAP CDIVGDISYE ELRMAAYDDA KRGLNLQTIV  180
DRERNLVNSK VIEFENLCKS GAVPQNSTPA NQTFPGTGPT AFTQNAQGPS AFSQNAQAPN  240
AFAQNAQAPH AFGQNAQTPN AFGQSAQVPN AIVQKAQGQN AFSQNAQGLN GFAQKAQGPN  300
AFSQNAQGPN AFSQKAQASA PTSVSSFSQL GTSLNMGFVS RPSAPLNNAF GQPNPFGVSS  360
QTSSAFGTNN LSPQSQGSPF APAPFSNTSF MSNPITTSTA SNQIPGLNGP STGFQQANST  420
QSEVLSTVDA SVWSKNKWAP GEIPEEAPPD AFCC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BJJ61e-110A0A2P5BJJ6_PARAD; Zinc finger, CCCH-type
TrEMBLA0A2P5FR771e-118A0A2P5FR77_TREOI; Zinc finger, CCCH-type
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-75C3H family protein