PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021244.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 104aa    MW: 11686.1 Da    PI: 9.8748
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021244.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-091760344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          +WT+   +++ +a + + ++   +W  +a+ +g g+t++++k ++
  HL.SW.v1.0.G021244.1 17 SWTPKQNKQFEKALAVYDKDtpdRWQNVAKAVG-GKTPEEVKRHY 60
                          7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5451373IPR017884SANT domain
SMARTSM007172.1E-71466IPR001005SANT/Myb domain
SuperFamilySSF466893.44E-131671IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-61766IPR009057Homeodomain-like
CDDcd001674.27E-81760No hitNo description
PfamPF002492.1E-71760IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSSSAGSFSH ARNSNSSWTP KQNKQFEKAL AVYDKDTPDR WQNVAKAVGG KTPEEVKRHY  60
DILVQDLMKI ESDQFPTPNY RGAGCSLRGF GDNEHRLMRN LKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-338103192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102082.25e-50protein RADIALIS-like 6
SwissprotQ1A1732e-38RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2P5F6M52e-55A0A2P5F6M5_TREOI; Octamer-binding transcription factor
STRINGXP_010102082.19e-45(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-41RAD-like 6