PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021257.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 167aa    MW: 19222.1 Da    PI: 9.34
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021257.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-1634132197
                           EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           ffk+l+++++  s  ++l +p +fa ++ ++  ++ + +l  ++g+ W+ ++++   + k ++  + +GW+eFvk  +L++gD+++F+l
  HL.SW.v1.0.G021257.1  34 FFKILMQPSHVDSrrDQLFVPLNFAMKYIKN--QG-DAVLSGPNGKYWSAEFKMrslKVKNRGARICNGWQEFVKGYNLEVGDVCIFEL 119
                           77888766655444799********999544..43.79**********98887777766666688999********************8 PP

                           -SSSEE..EEEEE CS
                    B3  85 dgrsefelvvkvf 97 
                            +  + ++ v+++
  HL.SW.v1.0.G021257.1 120 LDGVQITFEVSIV 132
                           7666666677665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1928133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2130134IPR015300DNA-binding pseudobarrel domain
CDDcd100176.65E-2033133No hitNo description
PfamPF023622.4E-1434132IPR003340B3 DNA binding domain
SMARTSM010199.1E-1235135IPR003340B3 DNA binding domain
PROSITE profilePS5086312.11136135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MYMSTTQKTS QYRLTSSQRA RILERVPFES EKPFFKILMQ PSHVDSRRDQ LFVPLNFAMK  60
YIKNQGDAVL SGPNGKYWSA EFKMRSLKVK NRGARICNGW QEFVKGYNLE VGDVCIFELL  120
DGVQITFEVS IVRFAEYECC QWSQASNYAS GASKPYKDVK VKIEIE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BZ547e-57A0A2P5BZ54_PARAD; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1608859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-12related to vernalization1 1