PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021766.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 462aa    MW: 51204.7 Da    PI: 4.6012
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021766.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.42.5e-4861331128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           l+pGfrFhPtd elv++yLk+kv gkkl++ e+i+e+diyk+ PwdLp k ++ +++ +++fF++r kkya+g r nra++ gyWk+tg
  HL.SW.v1.0.G021766.1   6 LAPGFRFHPTDVELVKYYLKRKVLGKKLQV-EAIAEIDIYKHTPWDLPdKsCLPSKDLKYFFFCPRVKKYASGGRMNRAAEGGYWKTTG 93 
                           579***************************.89**************9634666777799***************************** PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd++v++ ++e+vg  ktLvf++grapkg++tdWvmhey+l
  HL.SW.v1.0.G021766.1  94 KDRDVKH-NSEVVGAIKTLVFHTGRAPKGNRTDWVMHEYTL 133
                           *******.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-554156IPR003441NAC domain
PROSITE profilePS5100552.4736156IPR003441NAC domain
PfamPF023651.1E-248133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGKSFLAPGF RFHPTDVELV KYYLKRKVLG KKLQVEAIAE IDIYKHTPWD LPDKSCLPSK  60
DLKYFFFCPR VKKYASGGRM NRAAEGGYWK TTGKDRDVKH NSEVVGAIKT LVFHTGRAPK  120
GNRTDWVMHE YTLMEHGLAK LDVVQDSYVL CVVFKKEGPG PKNGAQYGAP FVEEDWTDDE  180
KDSCLEVDVQ NVLPTREHAA SSSHAPESIC IEGAESCLIP STYVVHQSFS EDDVSHRNQF  240
VASCSHALES QDFGSSSDLG VCMAPPVRDA PPLVCGSDVL SENPPVTNND DIMLLLDSFF  300
VEGDPTEVNE NHTIKDTTDP VHDNAAQHAS CPDTTDPVHD NAAQHASCPV DANDIFRGLG  360
DLGNLYSPNW AEDDLSGSHT LEQFTPGDNG PSYLELRDLE APLTRSNTSS LWDHDMGNYQ  420
FDCSTAIQNT DYSQQYLLTE INYQLEELNT IHGSENHQTP K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-43616217171NO APICAL MERISTEM PROTEIN
1ut4_B2e-43616217171NO APICAL MERISTEM PROTEIN
1ut7_A2e-43616217171NO APICAL MERISTEM PROTEIN
1ut7_B2e-43616217171NO APICAL MERISTEM PROTEIN
4dul_A2e-43616217171NAC domain-containing protein 19
4dul_B2e-43616217171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090859.11e-121NAC domain-containing protein 82
RefseqXP_024017752.11e-121NAC domain-containing protein 82
TrEMBLW9QLV41e-120W9QLV4_9ROSA; NAC domain-containing protein 78
STRINGXP_010090859.11e-121(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.42e-93NAC domain containing protein 82