PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021892.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 272aa    MW: 29920.5 Da    PI: 5.7639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021892.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT  Ed++l  +++ +G g+W+  +++ g++R++k+c++rw++yl
  HL.SW.v1.0.G021892.1 14 KGAWTVLEDKILTAYIEAHGEGQWRNLPKKAGLKRCGKSCRLRWLNYL 61
                          79********************************************97 PP
2Myb_DNA-binding49.51e-1567111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  HL.SW.v1.0.G021892.1  67 RGNISLDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                           788999****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.573961IPR017930Myb domain
SuperFamilySSF466891.13E-2712108IPR009057Homeodomain-like
SMARTSM007172.9E-121363IPR001005SANT/Myb domain
PfamPF002497.5E-131461IPR001005SANT/Myb domain
CDDcd001678.20E-91661No hitNo description
PROSITE profilePS5129424.34162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2365116IPR009057Homeodomain-like
SMARTSM007179.1E-1566114IPR001005SANT/Myb domain
PfamPF002496.5E-1467111IPR001005SANT/Myb domain
CDDcd001674.43E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRSPCCSKE GLNKGAWTVL EDKILTAYIE AHGEGQWRNL PKKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SLDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKVNSKQ  120
ITKSSSSSGD EDNEATKASS RVLSDSGGGG GGTSKVIRTR ASRCTKVVIP TPTTTLSFPP  180
PPLLLELNET SLKNNNSDDG GGDFGVLLPY RHDDTVLNDW SAVDDYYDPM IISTGGDGTV  240
DNNCLHQEKD DDGIFDFDLD SFLVDSSEWL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672613.17e-88myb-related protein 308-like
TrEMBLA0A2P5B1974e-91A0A2P5B197_TREOI; GAMYB transcription factor
STRINGVIT_04s0008g01800.t012e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-61myb domain protein 7