PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021964.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 441aa    MW: 47681.2 Da    PI: 8.0463
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021964.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.6e-124873126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ++++ C +++rtG C yG++C+F+H+
  HL.SW.v1.0.G021964.1 48 PGEPDCIYYLRTGSCGYGNNCRFNHP 73
                          5789*********************8 PP
2zf-CCCH38.51.9e-1291115327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C +f++tGtCkyG++CkF+H++
  HL.SW.v1.0.G021964.1  91 QPDCGYFLKTGTCKYGSTCKFHHPR 115
                           789********************96 PP
3zf-CCCH345e-11138160527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            C+++ rtG Ck+G+ CkF+H++
  HL.SW.v1.0.G021964.1 138 SCPYYVRTGACKFGPACKFHHPQ 160
                           6********************97 PP
4zf-CCCH38.12.6e-12283308227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++Cr+f+ tGtCkyG  Ck++H++
  HL.SW.v1.0.G021964.1 283 DQPECRYFMNTGTCKYGTDCKYHHPK 308
                           689*********************96 PP
5zf-CCCH34.43.8e-11328352226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           +++ C++++ +G CkyG++CkF H+
  HL.SW.v1.0.G021964.1 328 GQAVCSYYSMYGLCKYGPTCKFDHP 352
                           7899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4794775IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-54774IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-65274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-55372IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-688115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.79388116IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-1091115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-692117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-594115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455133161IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-5135160IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-9137160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4138159IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5281308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.201281309IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9283308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-6285310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-6287308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6326351IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6326353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76326354IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-8328352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4331351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MPDTRQPQKN AVPNQSDGNI EEAIWRLKIN DNQEGGGLSQ SNPFPDRPGE PDCIYYLRTG  60
SCGYGNNCRF NHPAYAPQAQ YNGELPERVG QPDCGYFLKT GTCKYGSTCK FHHPRDRRGA  120
GPVSFNILGL PMRQEEKSCP YYVRTGACKF GPACKFHHPQ PASHGTVFPV APPAYGSAGS  180
TVLPSSNLPY AGGLPAAWSL TRVPYLSGPQ PQPPPYVPVV VSPSQGIISA GVWNTYVGNM  240
SPASSTGFLG SNYVFNPRNP GESGSGGQVN LLHSTPSLPD RPDQPECRYF MNTGTCKYGT  300
DCKYHHPKER IVQPATIANQ IGLPSRPGQA VCSYYSMYGL CKYGPTCKFD HPAVPNVYNY  360
GMTLPTMLDS PYLSYPKGSP TAHVPEISHS LPSKSFDVVN KPLSYQNHNS DSRLSDDSAK  420
QTSSLVHSSP SSEASEDQSG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110220.10.0zinc finger CCCH domain-containing protein 3
TrEMBLA0A2P5EQH20.0A0A2P5EQH2_TREOI; Zinc finger, CCCH-type
STRINGXP_010110220.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-106C3H family protein