PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022080.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 325aa    MW: 35691.5 Da    PI: 6.6819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022080.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-19145195255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr ++ +g+++AeIrdp   + +  r++lg+f+ta eAa+a+++a+ +++g
  HL.SW.v1.0.G022080.1 145 HYRGVRKRP-WGKFAAEIRDP---NrRGSRVWLGTFDTAIEAARAYDRAAFRMRG 195
                           7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-32144204IPR001471AP2/ERF domain
CDDcd000189.74E-31145203No hitNo description
SuperFamilySSF541711.24E-22145204IPR016177DNA-binding domain
PfamPF008472.3E-14145195IPR001471AP2/ERF domain
SMARTSM003801.2E-37145209IPR001471AP2/ERF domain
PROSITE profilePS5103224.434145203IPR001471AP2/ERF domain
PRINTSPR003671.7E-10146157IPR001471AP2/ERF domain
PRINTSPR003671.7E-10169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MALEEETSTL ELIRQHLLND FGSMDSFINS LNMCTAQITQ KPTEFSFPEN NGHNQSFKVP  60
KTETTNDDDD DSHSFEFQTK PQSVTGNYSK PPKPSSLSQR RPSINVAIPP ATLCSKSPVP  120
ATVTVPATSS TSTCTSSENA SDSRHYRGVR KRPWGKFAAE IRDPNRRGSR VWLGTFDTAI  180
EAARAYDRAA FRMRGSKAIL NFPLEAGRSP RPESTDAHAP INCAERKRRR RSDGEEEEVM  240
REAKELKKEE LETTSTALTE NTSSNQEVSS SGSNGNGNSA IVPLTPSSWT SVWDSQDVKG  300
IFTVPPLSPL SPLPSFGYSQ LMVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-30144204161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229RKRRR
2225231RKRRRRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877689.14e-98ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2P5F3R91e-137A0A2P5F3R9_TREOI; AP2/ERF transcription factor
STRINGXP_008234445.14e-90(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.13e-33ethylene response factor 104