PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G022152.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 222aa MW: 25522 Da PI: 7.6025

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G022152.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.7	5.5e-30	52	138	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + k+ +++r++ra tr gCka+++vkkek+g+w+vt++++eHnH+l HL.SW.v1.0.G022152.1 52 FYDAYATQLGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPKR-SENRKPRAITREGCKAMIVVKKEKSGNWVVTRFVKEHNHPL 138 9*****************************************99.9************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-28	52	139	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MVTVDDHPSI IEDDGDTIEN SNGNEIVIAE ECSDMEPYVG MEFESEEASK VFYDAYATQL 60 GFIMRVDAFR RSMRDGKVVW RRLVCNKEGF RKLRPKRSEN RKPRAITREG CKAMIVVKKE 120 KSGNWVVTRF VKEHNHPLII TPANGRRSVV LSQTPDDKDV KIRELTAELQ RERKRSAAFQ 180 EQLDMVLRDM EEHSNHLSRN IDDIVESVKK IEGKKVAFSH S*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024020861.1	1e-139	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	2e-30	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2I4EFQ2	1e-132	A0A2I4EFQ2_JUGRE; protein FAR1-RELATED SEQUENCE 7
STRING	EMJ01654	1e-132	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	9e-95	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]