PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022307.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 296aa    MW: 32994 Da    PI: 6.7952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022307.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-092469346
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                           WT+eE + + +a + +      +W+++a++++ g++ ++++  + +
  HL.SW.v1.0.G022307.1 24 EWTKEENKEFERALAIYDETtpnRWAKVAAMIP-GKSVYDVIKQYKD 69
                          7*****************99*************.*******999876 PP
2Myb_DNA-binding37.45.8e-12122166347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT++E+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
  HL.SW.v1.0.G022307.1 122 PWTKDEHTRFLLGLMKYGKGDWRNISRNFVITKTPTQVASHAQKY 166
                           8*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.9382073IPR017884SANT domain
SMARTSM007171.2E-92173IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-112377IPR009057Homeodomain-like
CDDcd001671.38E-82470No hitNo description
PfamPF002491.3E-72470IPR001005SANT/Myb domain
PROSITE profilePS5129417.438115171IPR017930Myb domain
SuperFamilySSF466895.68E-15117171IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-16118170IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-9119165IPR009057Homeodomain-like
SMARTSM007176.2E-10119169IPR001005SANT/Myb domain
CDDcd001671.74E-8122166No hitNo description
PfamPF002492.6E-10122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
METLLPASFL STSSWLLQGS QSSEWTKEEN KEFERALAIY DETTPNRWAK VAAMIPGKSV  60
YDVIKQYKDL EDDVSDIEAG RVPIPGYLAS PFSFELVDDR DCFRKRPPSA RGSDHERKKG  120
VPWTKDEHTR FLLGLMKYGK GDWRNISRNF VITKTPTQVA SHAQKYYLRQ HSGGKDKRRP  180
SIHDFTTLNL TETTTTTSEN NIGSFLDQSS VIPSLQISAE EAQKVLRDWN IPSDEEALLA  240
LGSACGNLFM SSSPYESAPN GLKLPLGQNL FGGGACYAAH SKPQASIFEV QTSRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1525871173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095053.11e-150transcription factor DIVARICATA
SwissprotQ8S9H71e-85DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P5FHT71e-177A0A2P5FHT7_TREOI; GAMYB transcription factor
STRINGXP_010095053.11e-150(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-88MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]