PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022373.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 301aa    MW: 34164.1 Da    PI: 8.0565
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022373.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161360148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W+ +Ed++l+d+++++G g+W+t ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G022373.1 13 KGAWSIQEDQKLIDYINKHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 60
                          79******************************99************97 PP
2Myb_DNA-binding51.52.3e-1666111148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  HL.SW.v1.0.G022373.1  66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 111
                           8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-23463IPR009057Homeodomain-like
PROSITE profilePS5129416.864860IPR017930Myb domain
SuperFamilySSF466891.3E-2810107IPR009057Homeodomain-like
SMARTSM007171.1E-111262IPR001005SANT/Myb domain
PfamPF002491.6E-141360IPR001005SANT/Myb domain
CDDcd001673.02E-91560No hitNo description
PROSITE profilePS5129427.00461115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2664116IPR009057Homeodomain-like
SMARTSM007171.1E-1565113IPR001005SANT/Myb domain
PfamPF002495.3E-1566111IPR001005SANT/Myb domain
CDDcd001675.73E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRKPCCDKQD INKGAWSIQE DQKLIDYINK HGEGCWRTLP KAAGLLRCGK SCRLRWINYL  60
RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEIKNYWNSH LRRKLINMGI  120
DPNNHRLTHT ATTTPTTTTT TAPRPQLTLH HNNKNVMRTT TTTTSSAVIK SPKNDRVPPA  180
KPHRENGGGD HHEISDAASC LEDNQEYIST CSAHRDHHRL PDLNLDLTMS MDSTTAPLQQ  240
PDQPYSYHNT NNNVKDDDEA REPKFNAHQN NNHNPNQLRN DYCFEVLDSS SAAPTLPLFI  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27101154108B-MYB
1h8a_C2e-271011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044170.11e-101PREDICTED: transcription repressor MYB4
RefseqXP_010093406.21e-101transcription factor MYB8
TrEMBLA0A2P5FK671e-112A0A2P5FK67_TREOI; MYB transcription factor
STRINGXP_010044170.11e-101(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-73myb domain protein 4