PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G022411.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 374aa MW: 39862.8 Da PI: 8.6893

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G022411.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.4e-39	84	143	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s HL.SW.v1.0.G022411.1 84 PETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRS 143 67899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-34	72	142	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	87	142	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.674	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MVFSSVPHVY LDPPNWPQQP NHDHQHQQQQ QQQQQNSSRN DQNSQLPPPP PLPTAGGGVG 60 GGSAGSIRPG SMADRARLAK IPQPETALKC PRCDSTNTKF CYFNNYSLTQ PRHFCKTCRR 120 YWTRGGALRN VPVGGGCRRN KRSRGTNRSK SPAPDRQTPG SCSANTAAVT SNGSGSGDML 180 GHLGPQQTLP HLSFLPNLHH HLGEYGSSGD IGLNFGGLPP QVGNTGGGDD IEFQINGNGG 240 GGGGGGSGLG DHQQWRLQHQ VHQFPFMATS LEPPTRLYPF EHHQGGENGE PQRYVGGVGQ 300 LHSKPLDTQE VAATAVKVEG NNIHQQGLNN LSRNFLGSLG LNDHHQFLGG GSGGNITAWT 360 DLSSFASSTN HLL*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MVFSSVPHVY LDPPNWPQQP NHDHQHQQQQ QQQQQNSSRN DQNSQLPPPP PLPTAGGGVG  60
GGSAGSIRPG SMADRARLAK IPQPETALKC PRCDSTNTKF CYFNNYSLTQ PRHFCKTCRR  120
YWTRGGALRN VPVGGGCRRN KRSRGTNRSK SPAPDRQTPG SCSANTAAVT SNGSGSGDML  180
GHLGPQQTLP HLSFLPNLHH HLGEYGSSGD IGLNFGGLPP QVGNTGGGDD IEFQINGNGG  240
GGGGGGSGLG DHQQWRLQHQ VHQFPFMATS LEPPTRLYPF EHHQGGENGE PQRYVGGVGQ  300
LHSKPLDTQE VAATAVKVEG NNIHQQGLNN LSRNFLGSLG LNDHHQFLGG GSGGNITAWT  360
DLSSFASSTN HLL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00407	DAP	Transfer from AT3G55370	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024928012.1	1e-109	dof zinc finger protein DOF3.6-like
TrEMBL	A0A2P5C6J0	1e-158	A0A2P5C6J0_PARAD; Zinc finger, Dof-type
STRING	XP_006486095.1	1e-105	(Citrus sinensis)
STRING	XP_006436002.1	1e-105	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	1e-55	OBF-binding protein 3